KEGG   Mus musculus (house mouse): 12937
Entry
12937             CDS       T01002                                 
Symbol
Pcdha6, CNR, Cnr2, Crnr2
Name
(RefSeq) protocadherin alpha 6
  KO
K16493  protocadherin alpha
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mmu03036]
    12937 (Pcdha6)
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:mmu04515]
    12937 (Pcdha6)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Centrosome formation proteins
   Other centriole associated proteins
    12937 (Pcdha6)
Cell adhesion molecules [BR:mmu04515]
 Cadherins
  Protocadherins
   12937 (Pcdha6)
SSDB
Motif
Pfam: Cadherin Cadherin_tail Cadherin_2 Cadherin_3 Cadherin_C_2 DUF1700
Other DBs
NCBI-GeneID: 12937
NCBI-ProteinID: NP_031793
MGI: 1298367
Ensembl: ENSMUSG00000103707
UniProt: Q91Y14
Position
18:37100678..37321950
AA seq 946 aa
MDFTTEGRLGTRCMLLSLLLLAAWEAGSGQLHYSVPEEAKHGTFVGRIAQDLGLELTELV
PRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVE
VEVRDINDNPPVFSVKEQRMLIYESRLPDSLFPLEGASDADVGLNSMLTYKLSPSEYFGL
DVKSNSDGNKQIRLLLKKSLDREDAPEHKLLLTATDGGKPELTGSVQLLVTVLDVNDNAP
TFQHPEYEVRILENSDNGTTVIRLNASDKDEGTNSAISYSFNRLVPPKTLEQFSIDADTG
EIITQGNLDFEQVDVYKIHVDATDKGHPPMVGHCTVLVKVLDENDNVPQITLTSLSLPVR
EDAALSTVIALISVSDLDSGSNGQVTCSLSPHVPFKLVSTFKNYYSLVLDSALDRETTAD
YQVVVTARDGGSPSLWTTASVSVEVADVNDNAPSFAQPDYTVFVKENNPPGAHIFTVSAM
DADAQENALVSYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDA
GVPALGSNVTLQVFVLDENDNAPTLLGPWTPGSGGVVSELVSPSVGAGQVVTKVRAVDAD
SGYNAWLSYELHPLAGGTRSLFRVGLYTGEISTTRALEEADAPRHRLLVLVKDHGEPALI
ATATVLVSLVENSQTPKASSRAQGATGQEVSLVNVNVYLIIAICAVSSLLVLTLMVYTAL
RCSVPPTEGVCGAGKPVLVCSSAVGSWSYSQQRRQKVCSGEGPPKTDLMAFSPSLPPCPV
VGEHQDLNDDHCSRPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSS
ATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPA
NNQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
NT seq 2841 nt   +upstreamnt  +downstreamnt
atggattttaccactgaaggccgactgggaacacggtgtatgctgctctcgctcctgctc
ctcgcagcctgggaggcagggagcggccagcttcattactccgtcccagaggaggccaaa
cacggcaccttcgtgggccgcatcgcgcaggacctggggctggagctgacggagctggtg
ccccgcctgttcagggtggcgtccaaggaccgcggggaccttctggaggtaaatctgcag
aatggcattttgtttgtgaattctcggatcgaccgggaggagctgtgcgggcggagcgtg
gagtgtagcatccacctggaggtgatcgtggacaggccgctgcaggttttccacgtggag
gtggaggtgagggacattaatgataacccgcctgtgttctcagtaaaggagcaaagaatg
ttaatttacgaatctaggctgccagattctttgtttccactagagggcgcatcagatgct
gatgttggattaaattctatgttaacctataaactcagtcccagcgaatactttgggcta
gatgtgaaatcaaacagcgatggcaacaaacaaattagactcttgttgaaaaaatccttg
gacagagaggatgctcctgagcataagctactgctgacagccacggatggaggcaaacct
gagctcacaggctctgttcagctgctggtcactgtgctggatgtgaatgataacgcccct
actttccagcaccctgagtatgaagtgagaatcttggaaaactcagacaacggaacgaca
gttattagactgaatgcttctgacaaggatgaagggacgaattcagcaatttcgtactct
tttaatagactggtgccgcccaagactcttgagcagtttagcatagatgcagatacagga
gaaatcataactcaaggaaatttggactttgagcaagtagatgtctacaaaatccacgtt
gatgcgacggacaaaggacaccctccgatggtgggccattgcactgttttagtgaaggta
ttggatgagaacgacaatgtgcctcagatcactttgacttccttatccctgcctgttcga
gaggacgctgcactgagtactgtcattgctctaattagcgtttcggatctggactctgga
tccaacgggcaggtgacctgctccctgagtcctcatgtccccttcaagttggtgtccacc
ttcaagaattactattcgcttgtgttggacagcgccctggaccgagagaccacagctgac
tatcaggtggtggtgacagcgcgggacgggggttctccttctttgtggaccacggctagc
gtgtctgtggaggtggccgatgtgaacgacaatgcgccttcatttgcgcagcctgattac
acggtgttcgtgaaggagaacaaccctcctggagcgcacatcttcacagtatcggcgatg
gacgcggatgcgcaggagaacgcgctggtgtcctactcgctggtggagcggagggtgggc
gagcgcttgctgtcgagctatgtgtctgtgcacgcggaaagcggcaaggtgttcgctctg
cagcctctggaccatgaggagctggaactgctgcagttccaggtgagcgcgcgggatgct
ggtgtgcctgccctgggcagcaatgtgactctgcaggtgtttgtgctggatgagaacgac
aatgcgcccacgctgcttggaccttggacaccaggatctggtggtgtagtgagcgaactt
gtgtcaccttcagtgggtgctggccaggtggtcacaaaggtgcgtgcagtagatgcggat
tctggctataatgcctggctgtcttatgagctgcatcctttagcaggtggaacgcggagt
ctgtttagggtaggtctgtacacgggcgagatcagtaccacgcgtgcccttgaggaggca
gatgcaccacgccatcgcctattagtgctggtgaaggaccacggggagccagcgctgatt
gccacagccactgtgttagtgtctctggttgagaacagccagactccaaaagcctcttcg
cgagcgcaaggtgccactggccaggaagtttcgttagtgaatgtcaacgtgtacctgatc
attgccatctgtgcggtgtccagcctactagttctaaccctcatggtatacaccgcactg
cggtgctcagttccacctacagagggtgtgtgcggggcagggaagcctgtgctggtgtgc
tctagtgcggtagggagctggtcctactcacagcagaggagacagaaggtttgttctgga
gagggaccacccaaaaccgatctcatggccttcagcccgagtcttcctccttgtccggtt
gtgggtgagcatcaggatttgaacgacgatcattgctcaagaccccggcagcccaaccct
gactggcgctactctgcctcgctaagagcaggcatgcacagctctgtgcacctggaggag
gctggcattctacgggctggtccaggagggcctgatcagcagtggccaacagtatccagt
gcaacaccagaacctgaggcaggagaggtgtcccctccggtgggcgccggtgtcaacagc
aacagctggacctttaaatacggaccaggcaaccccaaacagtccggtcccggtgagttg
ccagacaaattcattatcccaggatctcctgcaatcatctccatccggcaggagcctgct
aacaaccaaattgacaaaagcgattttataaccttcggcaaaaaggaggagaccaagaaa
aagaagaaaaagaagaagggtaacaagacccaggagaaaaaagagaaagggaacagcacg
acggacaacagtgaccagtga

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Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (14)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (11)   
   RefSeq(nuc) (1)   
   GenBank (5)   
   EMBL (5)   
Protein domain (6)   
   Pfam (6)   
All databases (52)   

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