KEGG   Mus musculus (house mouse): 13209
Entry
13209             CDS       T01002                                 
Symbol
Ddx6, 1110001P04Rik, C430015D01Rik, E230023J21Rik, HLR2, mRCK/P54, p54, rck
Name
(RefSeq) DEAD-box helicase 6
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    13209 (Ddx6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    13209 (Ddx6)
   03036 Chromosome and associated proteins [BR:mmu03036]
    13209 (Ddx6)
Enzymes [BR:mmu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     13209 (Ddx6)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     13209 (Ddx6)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     13209 (Ddx6)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    13209 (Ddx6)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 13209
NCBI-ProteinID: NP_001104296
MGI: 104976
Ensembl: ENSMUSG00000032097
UniProt: P54823
Position
9:44514113..44552028
AA seq 483 aa
MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGTQPQPQLNQLKNTSTINNGTPQQAQ
SMAATIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPAED
EKP
NT seq 1452 nt   +upstreamnt  +downstreamnt
atgagcacggccagaacagagaaccctgttatcatgggtctgtccagtcagaacggccag
ctgaggggccctgtgaaggccagtgctggccctggaggagggggcacacagccacagcca
cagctgaaccagttgaagaacaccagcacaatcaataatggcactccacagcaagcccag
agcatggccgccactattaaacctggtgatgactggaaaaagacattaaaactccctcca
aaggatctaagaatcaaaacttcggatgtgacctccacaaaaggaaatgagtttgaagat
tactgtttgaaacgagagttgctaatgggaatttttgaaatgggctgggaaaaaccatct
cctatccaggaggagagcattcccattgctttatctggtagggatatcttagctagagca
aaaaatggaacaggcaaaagcggtgcctacctcatccccttacttgaaaggctggacctg
aagaaggacaatattcaagcaatggtgattgttcccactagagaacttgctctacaggtc
agtcagatttgcatccaggtcagcaaacacatgggaggggccaaagtgatggcaaccacc
ggaggaaccaatttacgagatgacataatgaggcttgatgatacagtgcatgtggtgatc
gctacccctggcaggatcctggatctcatcaagaaaggcgtggcaaaggttgaccatgtc
cagatgatagtgctagatgaggcagataaattgttgtcacaggattttgtgcagataatg
gaggatattattctcacactacctaaaaataggcagattttactatactccgctactttc
cctcttagtgtacaaaagtttatgaattcccatctgcaaaaaccctacgagataaacctg
atggaggaactaactctgaaaggagtaactcagtactacgcatatgtaacggagcgccaa
aaagtgcactgcctcaatacacttttctccaggcttcagataaaccagtccatcattttc
tgcaactcctcccagagagtcgagctactcgccaagaagatttctcagctgggctactct
tgcttttatatccatgctaaaatgaggcaggaacatcgaaatcgtgtctttcatgatttc
cgaaatggcttatgccgcaatcttgtttgcactgatctgtttacccgaggtattgatata
caagctgtgaatgtggtaataaactttgacttcccaaagctggcagagacctatcttcat
cgtattggaagatcaggtcgctttggtcatcttggcttagccatcaacttgatcacttat
gatgatcgcttcaacctgaagagtattgaggagcagctggggacagagatcaaacccatc
ccaagcaacatcgacaagagcctgtatgtggcagaataccacagtgagcctgcagaagac
gagaaaccgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (9)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (7)   
DNA sequence (27)   
   RefSeq(nuc) (7)   
   GenBank (10)   
   EMBL (10)   
Protein domain (4)   
   Pfam (4)   
All databases (64)   

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