KEGG   Mus musculus (house mouse): 16468
Entry
16468             CDS       T01002                                 
Symbol
Jarid2, Jmj, jumonji
Name
(RefSeq) jumonji and AT-rich interaction domain containing 2
  KO
K11478  protein Jumonji
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03083  Polycomb repressive complex
mmu04550  Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    16468 (Jarid2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04550 Signaling pathways regulating pluripotency of stem cells
    16468 (Jarid2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mmu03036]
    16468 (Jarid2)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    16468 (Jarid2)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.2
     16468 (Jarid2)
SSDB
Motif
Pfam: JmjC ARID JmjN zf-C5HC2
Other DBs
NCBI-GeneID: 16468
NCBI-ProteinID: NP_001191972
MGI: 104813
Ensembl: ENSMUSG00000038518
UniProt: Q62315
Structure
Position
13:44881817..45075119
AA seq 1234 aa
MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGLAGSLKAVN
GLLGNAQAKALGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQS
QPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQ
DEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSAREKEPAHK
HRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAASSAKGLAANHQPPPSHRSAQDLR
KQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKET
KPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAASGLKASSRLNPKSCTK
EVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVAGNAEAPGKKASAASGEKSLLNG
HVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTPCENRSTSQPESSHKPHDPQGKP
EKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLN
DEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLI
NEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKE
VLMEKEILEKRKGPLEGHTESDHHKFHSLPRFEPKNGLVHGVTPRNGFRSKLKEVGRAPL
KTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMNMCFSKEPA
PAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSI
LRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLED
VVHTLLQGNGTPGLQMLESNVMISPEVLCKKGIKVHRTVQQSGQFVVCFPGSFVSKVCCG
YNVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTIS
ALLDELRDTELRQRRLLFEAGLHSSARYGSHDGNSTVADGKKKPRKWLQLETSERRCQIC
QHLCYLSMVVQENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKVSG
KHGGIENCLNKPTPKRGPRKRATVDVPPSRLPSS
NT seq 3705 nt   +upstreamnt  +downstreamnt
atgagcaaggaaagacccaagaggaatatcattcagaagaaatacgatgacagcgatggg
atcccgtggtcagaagagagagttgtacgaaaagtcctgtatttgtccctaaaggaattc
aagaatgcacagaaaaggcagcatggggaaggccttgccgggagcctgaaggcggtaaat
gggcttcttggtaatgcccaggctaaggcactaggaccagcctcagagcagtcagagaac
gagaaggatgatgcctcccaagtgtcctctactagcaacgatgttagttcttcagatttt
gaagaagggccgtcgaggaaaaggcccaggctgcaagcacaaaggaagtttgctcaatct
cagccgaatagtcccagcacaactccagtgaagatagtggagcctttgctacccccgcca
gctactcaaatttctgacctctctaaaaggaagcctaagacagaagactttcttaccttt
ctctgccttcgaggttctcctgcgctgcccaacagtatggtatattttggaagctctcag
gatgaggaggatgtcgaagaggaagatgatgagacggaagatgtcaaagcaaccaccaac
aatgcttcatcttcgtgccagtcaacccccaggaaaggaaaaacccataagcatgtacac
aacgggcacgttttcaatggctccagtaggtcagcacgggagaaagagcctgctcacaaa
cacagaagcaaagaggccactccggggaaggagaagcacagcgagcccagggcagacagc
cggagagaacaggcttcaggggctcagcccacggccgcctcggctgcggcttcctctgcc
aagggacttgctgccaaccaccaacctcccccttcgcatcggtctgctcaggacttacgg
aaacaggtgtctaaggtaaatggagtcactcgaatgtcatctctgggtgcaggtacaaac
agtgccaaaaagatccgagaagtcagaccttcaccatccaaaactgtgaagtacactgcc
acagtgaccaaggggactgtcacatacaccaaagccaagagagaactggtcaaggaaacc
aaacccaaccaccacaaacccagttcagctgtcaaccacacaatctcagggaaaactgaa
agtagcaatgcaaaaacccgcaaacaggtgctatcccttgggggggcgtccaagtccacc
gggcctgctgccagtggcctcaaggccagcagcaggttgaacccaaagtcatgcactaag
gaggtgggggggcggcagctgagggaggggctgcggaattccaaaaggagactggaagag
gcacagcaagtggacaagccgcagtcaccccccaagaagatgaagggggtggcaggcaat
gctgaagcccctggcaaaaaggcctcagcggcttcaggagaaaagtctctgctgaatgga
cacgtgaagaaggaagtgcccgagcgaagtttggaaaggaatcggccaaagcgggccgcg
gctggcaagaatatgctgggcaaacaagcacatggcaagacagagggcaccccctgtgaa
aatcgttctacctcgcaacccgagtcctcgcacaagccgcatgacccacagggcaagcca
gagaaggggagcggcaagtctgggtgggcagcgatggacgagatccctgtcctcaggccc
tccgccaaggagttccacgacccgctcatctacatcgagtcagtacgtgctcaggtggag
aagtacgggatgtgtcgcgtgattccccctccagactggcggccagagtgcaagctcaac
gatgagatgcgctttgtcacgcagatccagcacatccataagctgggccggcgctggggc
cccaacgtgcagcggctagcctgcataaagaagcacctcagatctcagggcatcaccatg
gatgagctccccctcataggaggctgtgagctcgacctggcctgctttttccggctgatt
aatgagatgggcggcatgcagcaagtgactgacctcaaaaaatggaacaaactagcagac
atgctgcgcattcccaaaactgcccaggaccggctggccaagctgcaggaggcctactgc
cagtacctgctttcctatgactccctgtcccccgaggagcaccgacggctggagaaggag
gtgctgatggagaaggagatcctggaaaagcgcaaagggccattagaggggcacacggag
agcgaccaccacaagttccactccctgccccgctttgagcccaagaatgggctcgtccac
ggtgtcacacctaggaatggattccgtagcaagctcaaggaggtgggccgggccccactg
aagacgggccggcggcggctgttcgctcaggaaaaagaagtggtcaaagaggaggaagaa
gacaaaggtgtcctcaatgacttccacaagtgcatctataagggaagatctgtttctcta
acaactttttatcgaacagcaagaaacatcatgaacatgtgtttcagcaaggagcccgca
ccagcagagattgagcaagagtactggaggttagtggaagagaaggactgtcatgtggca
gttcactgcggaaaggtggacactaatacccatggcagcgggttcccggtgggaaaatca
gaacccttttcaaggcatggatggaacctcactgtcctcccaaataacacagggtccatc
ctgcgtcaccttggtgctgtgcctggagtgactattccctggctaaatattggcatggtc
ttttctacctcatgctggtctcgagaccaaaatcaccttccatatattgactacttacac
actggtgctgactgcatttggtattgcattcctgctgaggaggagaacaagctggaggac
gtagtccacactctgctgcagggcaatggtaccccagggctgcagatgctggagagcaat
gtaatgatctccccagaggtgctgtgcaagaaggggatcaaggtccacaggactgtacag
cagagtgggcagtttgtcgtctgcttcccgggatcctttgtgtccaaagtatgttgtggc
tacaacgtctcagagacagtgcactttgctaccacccagtggacaagcatgggcttcgag
actgccaaggagatgaagcgccgccatatagctaagccattctccatggagaagttgctc
taccagattgcacaagcagaagcaaaaaaggaaaatggtcccaccctcagtaccatctca
gcccttctggatgagctcagggatacagagctgcggcagcgcaggctgttgttcgaggct
ggccttcactcttctgcacgctatggcagccacgacggcaacagcacagtggcggatggg
aagaaaaagcctcgaaagtggctacagctggaaacttcagaaaggaggtgccagatctgc
cagcacttgtgctacctgtccatggtggtacaggagaatgagaatgtcgtgttctgcctg
gagtgtgcactgcgccatgtggagaagcagaagtcttgccgtgggctgaagctgatgtac
cgctacgatgaggagcagatcatcagtttggtcaaccagatatgtggcaaagtgtctggc
aaacacggtggcatcgagaactgtctcaacaaacccacaccaaaaagaggtccccgcaag
agagcgaccgtggatgtgccgccatctcggctcccatcctcatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (11)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (9)   
DNA sequence (39)   
   RefSeq(nuc) (9)   
   GenBank (15)   
   EMBL (15)   
3D Structure (1)   
   PDB (1)   
Protein domain (4)   
   Pfam (4)   
All databases (88)   

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