KEGG   Mus musculus (house mouse): 16882
Entry
16882             CDS       T01002                                 
Symbol
Lig3, D11Wsu78e
Name
(RefSeq) ligase III, DNA, ATP-dependent
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    16882 (Lig3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mmu03400]
    16882 (Lig3)
Enzymes [BR:mmu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     16882 (Lig3)
DNA repair and recombination proteins [BR:mmu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     16882 (Lig3)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 16882
NCBI-ProteinID: NP_001278174
MGI: 109152
Ensembl: ENSMUSG00000020697
UniProt: Q80ZH7
Position
11:82671977..82695100
AA seq 1012 aa
MTLAFKILFPRNLCALGRKELCLFPEQNRWAAISQFSQWSETNLLGGCCLLQRRKPVLAL
QRGHLRPRATHLTFWPGSHVGLCTGPCAMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRI
GKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQ
HIADLSSKAAATPKKKAAVQAKLTTTGQVTSPVKGASFITSTNPRKFSGFSAAKPNNSEQ
APSSPAPGTSLSASKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIHDFLQKGSTGDG
FHGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRIFF
EQSKSFPPAAKSLLTIQEVDAFLLHLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKH
DLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNEQEVEKDPGRRRALRVQASLM
TPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHKV
AHFKDYIPKAFPGGQSMILDSEVLLIDNNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKASDLADMINRVIREGLEGLV
LKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
DSQKWCTVTKCAGGHDDATLARLQKELVMVKISKDPSKIPSWLKINKIYYPDFIVPDPKK
AAVWEITGAEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKDKADF
AVVAGDEASPTTGGSSGENEGTAGSAGPCKGPPSKSSASAKTTEQKLNSPSSRGGIKPIP
KHSPMKPGEKLAVKSSPVKVGMKRKATDETPCLKKVLLDVFTGVRLYLPPSTPDFKRLKR
YFVAFDGDLVQEFDMGSATHVLGNREKNTDAQLVSSEWIWACIRKRRLIAPC
NT seq 3039 nt   +upstreamnt  +downstreamnt
atgactttggctttcaagatcctcttcccgagaaacctttgtgcccttggcagaaaagaa
ctgtgcctgttcccagaacagaatcgctgggctgccataagtcagttcagccagtggtcg
gaaacaaatctcctcggtgggtgctgccttctccagagaagaaagcctgtcctagctctc
cagagaggtcatctaagaccacgtgccacccaccttactttctggccagggtcgcatgtg
ggactctgtactggcccctgtgcgatggcagagcagcggttctgtgtggactatgccaag
cggggcacagctggatgcaagaaatgcaaggagaagattgtaaagggcgtgtgccgcatt
ggcaaagtggtgcccaaccccttctcagagtctgggggtgatatgaaagagtggtaccac
attaagtgcatgtttgagaaactggaacgggctcgggccaccacaaagaaaattgaagac
ctcacagagctggaaggctgggaagagctggaagataacgaaaaggaacagataagccag
catattgcagacctgtcttctaaggcagctgccacacctaagaagaaagctgctgtccag
gctaagctgacaaccactggccaggtgacatctccagtgaaaggtgcttcgtttattacc
agtaccaatcctcggaagttctctggcttttcagcagcaaaacccaacaactctgagcaa
gccccctcaagccctgctcctggaacgagtctgtctgcaagtaaatgtgaccctaagcac
aaagattgtctgctacgagagttccggaagctgtgcgccatggtggctgaaaatcctagc
tataacaccaagacccagatcatccatgacttcttgcagaaaggctccacaggagatggc
tttcacggtgatgtgtacctgacagttaagctgctgctgcctggtgtcatcaagagtgtt
tacaacttgaatgataagcagattgtaaaactttttagccgaatttttaactgcaaccca
gatgatatggcccgggacctagaacagggtgacgtgtcagagacgatcagaatcttcttt
gagcagagcaagtctttccccccagctgccaaaagcctcctcaccattcaggaagtggat
gccttcctcctgcacctctccaagctcaccaaagaggatgagcagcagcaggccctgcag
gacatagcctcccggtgtacagccaatgaccttaagtgcattattcggctgatcaaacat
gatctgaagatgaactcgggtgcaaaacacgtgttagatgcccttgaccccaatgcttat
gaagccttcaaagcatcgcgcaacctgcaggatgtggtggagcgagtccttcacaatgag
caggaggtggagaaggacccaggccggcgacgggctctgagggtccaggcctcactgatg
acgcctgtgcagcccatgctggctgaggcctgcaaatccattgaatatgcaatgaagaag
tgtcccaatggcatgttctctgagatcaagtacgatggtgagcgagtccaggtgcataag
aagggggaccacttcagctacttcagccgcagtctcaagcctgtcctgcctcacaaggtg
gcccacttcaaggactatatacccaaagcttttcctgggggtcaaagcatgatcttggat
tccgaggtactcctgattgacaacaacacaggcaaaccactgccctttgggactctggga
gtgcacaagaaagctgctttccaggatgctaatgtctgcctgtttgtttttgattgtatc
tactttaatgatgtcagcttgatggacaggcctctctgtgagcgacggaagtttcttcat
gacaacatggttgaaatccgtaaccggatcatgttctcagaaatgaagcaagtcacaaaa
gcttcagacctggctgacatgataaaccgggtgatccgagagggcttggaagggttggtg
ctaaaggatgtgaagggtacatatgagcctgggaagcggcactggctgaaagttaagaaa
gattatttgaatgagggggccatggctgatacagctgatctggtggttcttggggccttc
tatgggcaagggagcaaaggcggaatgatgtccatcttcctcatgggctgctatgaccct
gacagccaaaagtggtgcactgttacaaaatgtgctggaggccatgatgatgccacactt
gcccgcctgcagaaagagctggttatggtgaagatcagcaaggatcctagtaagataccc
agctggctgaagatcaacaagatctattatcctgactttatcgtcccagacccaaagaaa
gctgctgtgtgggagatcacaggggcagaattctccagatctgaggcacacactgctgat
ggcatctccatccgatttcctcgatgcacccgaatccgggacgacaaggactggaaatct
gccactaacctcccccaactcaaggaactgtaccagctgtccaaagacaaggcagacttt
gctgtggtggctggagatgaggcaagccccactactggaggcagcagtggcgagaacgag
ggcactgctgggtctgctgggccctgcaagggcccccccagtaagtcctctgccagtgcc
aagaccaccgaacagaagctcaatagccccagtagcagaggtggcatcaaaccgattcca
aagcattcccccatgaaaccaggagagaagctggctgtgaagtcttctccagtcaaagtg
ggaatgaagaggaaagctactgatgagaccccatgcctgaaaaaggtactgttggatgtc
ttcactggggtgcggctctacttgccaccttctacaccagacttcaaacgtctcaaacgc
tactttgtggcattcgacggggacctggtacaggaatttgacatgggctcagccacacat
gtgctaggtaacagggaaaagaacactgatgcccagttggtctcctcagagtggatttgg
gcatgtatccggaaacggaggctgatagctccctgctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (17)   
   UniProt (1)   
   RefSeq(pep) (16)   
DNA sequence (65)   
   RefSeq(nuc) (17)   
   GenBank (24)   
   EMBL (24)   
Protein domain (8)   
   Pfam (8)   
All databases (124)   

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