KEGG   Mus musculus (house mouse): 19179
Entry
19179             CDS       T01002                                 
Symbol
Psmc1, P26s4, Rpt2/S4, S4, rpt2
Name
(RefSeq) protease (prosome, macropain) 26S subunit, ATPase 1
  KO
K03062  26S proteasome regulatory subunit T2
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03050  Proteasome
mmu05010  Alzheimer disease
mmu05012  Parkinson disease
mmu05014  Amyotrophic lateral sclerosis
mmu05016  Huntington disease
mmu05017  Spinocerebellar ataxia
mmu05020  Prion disease
mmu05022  Pathways of neurodegeneration - multiple diseases
mmu05165  Human papillomavirus infection
mmu05169  Epstein-Barr virus infection
mmu05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03050 Proteasome
    19179 (Psmc1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    19179 (Psmc1)
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    19179 (Psmc1)
   05165 Human papillomavirus infection
    19179 (Psmc1)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    19179 (Psmc1)
   05012 Parkinson disease
    19179 (Psmc1)
   05014 Amyotrophic lateral sclerosis
    19179 (Psmc1)
   05016 Huntington disease
    19179 (Psmc1)
   05017 Spinocerebellar ataxia
    19179 (Psmc1)
   05020 Prion disease
    19179 (Psmc1)
   05022 Pathways of neurodegeneration - multiple diseases
    19179 (Psmc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:mmu03051]
    19179 (Psmc1)
Proteasome [BR:mmu03051]
 Eukaryotic proteasome
  Regulatory particles
   PA700 (19S proteasome)
    ATPase subunits
     19179 (Psmc1)
SSDB
Motif
Pfam: AAA Prot_ATP_ID_OB_C AAA_lid_3 AAA_2 AAA_22 nSTAND3 DUF815 AAA_5 RuvB_N AAA_16 AAA_25 AAA_28 AAA_14 RNA_helicase AAA_3 ATPase IstB_IS21 TIP49 AAA_11 AAA_18 Mg_chelatase Prot_ATP_ID_OB_N AAA_7 AAA_33 Parvo_NS1 NB-ARC PhoH NACHT AAA_24 AAA_30 TsaE
Other DBs
NCBI-GeneID: 19179
NCBI-ProteinID: NP_032973
MGI: 106054
Ensembl: ENSMUSG00000021178
UniProt: P62192 Q542I9
Position
12:100076461..100089623
AA seq 440 aa
MGQSQSGGHGPGGGKKDDKDKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRL
KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH
AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP
QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA
NQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG
GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT
KKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFK
KSKENVLYKKQEGTPEGLYL
NT seq 1323 nt   +upstreamnt  +downstreamnt
atgggtcaaagccagagtggtggccatggtcctgggggtggcaagaaggatgacaaggac
aagaaaaagaaatacgaacctcctgtcccaactagagtggggaaaaagaagaagaaaaca
aagggaccagatgctgccagcaaactgccactggtaacacctcacacccagtgccgcctg
aaattactgaagctagagagaataaaagactatcttctcatggaggaggaattcattaga
aaccaggaacagatgaaaccattagaagaaaagcaagaggaggaaagatcaaaagtggat
gatctcagggggacccccatgtctgtaggaaccttggaagagatcattgatgataatcac
gccattgtgtccacatctgtgggctcagaacactacgtcagcatcctgtcgtttgtagac
aaggatctgctggaaccaggctgctccgtcctgctcaaccacaaggtgcatgctgtgata
ggggtgctaatggatgacacggatcccctggtcacagtgatgaaggtggaaaaggccccc
caggagacctacgcagatattgggggactggacaaccagatccaagaaattaaggagtct
gtggagctcccgcttacccatcctgagtattacgaggagatggggataaagccccctaag
ggggtcattctctacggtccgccaggaacaggtaaaactctattggccaaagcagtagcg
aaccagacttcagccactttcttgcgagtggttggctcagagcttatccagaagtaccta
ggtgacgggcccaaacttgtccgggagctcttccgggtcgctgaggagcatgcgccgtcc
atcgtgttcattgatgagatcgacgccattgggaccaaaagatatgattcaaattctgga
ggtgagagagaaattcagcgaacaatgttggaactgttgaaccagttggatggatttgat
tcgaggggagatgtaaaagttatcatggccacaaaccgaatagaaactttggatccagca
cttatcaggccaggccgcattgacagaaagatcgagttccccctgccggatgagaagacc
aagaagcgtatcttccagattcacaccagcaggatgacactggctgatgatgtaaccttg
gatgacttgatcatggcaaaggatgacctctctggggccgacatcaaggcaatctgtaca
gaagctggcttgatggccttgcgggaacgcagaatgaaagtaacaaatgaagacttcaaa
aaatctaaagagaatgttctttataaaaaacaagaaggcacccctgaggggctctatctc
tag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (11)   
   KEGG PATHWAY (11)   
Genome (1)   
   KEGG GENOME (1)   
Gene (93)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (85)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (21)   
   RefSeq(nuc) (1)   
   GenBank (10)   
   EMBL (10)   
Protein domain (31)   
   Pfam (31)   
All databases (163)   

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