KEGG   Mus musculus (house mouse): 19687
Entry
19687             CDS       T01002                                 
Symbol
Rfc1, 140kDa, Alp145, RFC140, Recc1
Name
(RefSeq) replication factor C (activator 1) 1
  KO
K10754  replication factor C subunit 1
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03030  DNA replication
mmu03410  Base excision repair
mmu03420  Nucleotide excision repair
mmu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    19687 (Rfc1)
   03410 Base excision repair
    19687 (Rfc1)
   03420 Nucleotide excision repair
    19687 (Rfc1)
   03430 Mismatch repair
    19687 (Rfc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mmu03032]
    19687 (Rfc1)
   03400 DNA repair and recombination proteins [BR:mmu03400]
    19687 (Rfc1)
DNA replication proteins [BR:mmu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    19687 (Rfc1)
DNA repair and recombination proteins [BR:mmu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     19687 (Rfc1)
SSDB
Motif
Pfam: RFC1 BRCT AAA PTCB-BRCT RuvB_N AAA_22 Rad17 BRCT_2 AAA_14 AAA_16 AAA_33 AAA_18 AAA_5 nSTAND3 Zeta_toxin AAA_17 AAA_30 AAA_7 RNA_helicase NTPase_1 AAA_19 AAA_28
Other DBs
NCBI-GeneID: 19687
NCBI-ProteinID: NP_035388
MGI: 97891
Ensembl: ENSMUSG00000029191
UniProt: P35601 G3X8Z6
Position
5:complement(65419195..65492988)
AA seq 1131 aa
MDIRKFFGVISSGKKPVNETVKNEKTKASEGTVKGKKGVKEAKVNNSGKEDASKPKQHSK
KKRIINDSDSESEETVQVKNAKKKSEKLSLSYKPGKVSQKDPVTYVSETDEDDDFVCKKA
ASKSKENGVSTNSYLGTSNVKKNEENVKTKNKPLSPIKLTPTSVLDYFGTESVQRSGKKM
VTSKRKESSQNTEDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLALLDEEPKIKKA
RKDSEEGEESFSSVQDDLSKAEKQKSPNKAELFSTARKTYSPAKHGKGRASEDAKQPCKS
AHRKEACSSPKASAKLALMKAKEESSYNETELLAARRKESATEPKGEKTTPKKTKVSPTK
RESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIER
DEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMP
GKRSKYEMAAEAEMKKEKSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAV
KKEASTCPRGLDVKETHGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLR
NWHKSSPEEKKHAAKFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELN
ASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQE
LIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIP
PPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVF
AAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSIC
DGDLVDNQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIV
QDLSLHMSLRTYSSKRTVNMDYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFE
NIMEVSSWGGKPSAFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKTSRLSTGPALDSEYS
EEFQEDDTQSEKEQDAVETDAMIKKKTRSSKPSKSEREKESKKGKGKNWKK
NT seq 3396 nt   +upstreamnt  +downstreamnt
atggacattcggaaattctttggggttatatcaagtggaaaaaagcctgtaaacgagaca
gtaaagaatgagaagacaaaagcttcggagggaactgtcaaaggaaaaaagggagtcaag
gaggccaaggtcaataactccggtaaagaggacgcctccaaaccaaagcagcacagcaag
aagaagaggatcatcaatgactcagactcagagtcagaggagacagtacaggtaaaaaat
gctaaaaagaaatcagaaaaattgtcactgtcttataaacctggtaaagtctctcagaag
gatcctgtcacctacgtctctgagacagatgaagatgatgactttgtatgtaaaaaggca
gcctccaaatcaaaagagaatggagtatctacaaatagttaccttggaacatcaaacgtg
aaaaaaaatgaagaaaacgttaagactaagaacaagccgttatctccaataaaactcaca
ccaacgtcagtgctcgactattttggaactgaaagtgtccagagatctgggaagaagatg
gtgacaagcaaaaggaaagaatcttctcaaaacacagaggattccagattaaatgatgag
gccatcgccaagcagctgcagctggatgaagatgcagagctggagaggcagttgcatgaa
gatgaagaatttgcaagaacactggccttattggatgaagaacccaagatcaaaaaggcc
cgaaaggattctgaagagggagaagaatcattttcatctgtccaagatgatttaagcaaa
gcagaaaagcagaaaagccctaataaagccgagcttttctcaactgcaagaaagacctac
agtcctgctaagcatggcaaggggagggcttcagaagatgctaagcagccttgcaaatca
gctcaccggaaggaagcctgttcctcacccaaggccagtgccaaactggcgcttatgaaa
gcaaaagaagaaagttcttacaacgaaacagagctgctggctgcaagaagaaaagaaagc
gccactgaacccaaaggagagaaaacaactcctaagaaaacgaaagtttctccaactaag
agagagtctgtaagcccagaagactctgaaaagaagcgcactaattatcaagcttatcga
agctacttgaaccgagaaggtcccaaagctctgggctccaaagaaatacccaagggagct
gaaaattgcttggaaggcctgacgtttgtgatcacaggagtgctggagtccattgaacga
gacgaagccaagtctctaattgaacgttatggggggaaagtaacaggaaacgtgagcaag
aaaaccaactacctcgtcatgggccgcgacagtgggcagtccaagagtgacaaggcagca
gctctgggaacaaaaatcctcgatgaagacggcctgttggatctgattcgaactatgcca
ggcaagagatccaagtatgagatggctgctgaggctgagatgaagaaagaaaagtccaaa
ttggagcgaacaccccaaaaaaatgatcaaggaaaaagaaaaattagtccagccaagaag
gagtcagagtctaaaaagtgcaagctgactctcctaaagaacagtcctatgaaggcagtg
aagaaggaggcaagcacgtgcccaaggggcctggatgtcaaggagacacatggcaaccgc
agtagcaacaaagaggaatgtctgctctgggtggataagtacaagcccgcctcactcaag
aacataatcggacagcagggtgaccagagctgtgccaacaaattactacgttggctcaga
aactggcacaagagttctcctgaagagaaaaaacatgcagcaaagtttggcaaacttgcc
agcaaagatgatggctccagtttcaaggcagctctgctgtctggccctccaggtgttggc
aaaaccactacagcttctcttgtgtgtcaggaattgggctacagttatgtggaactaaat
gcaagtgatactcggagtaagaacagtttgaaagcagttgttgctgaatccttgaacaac
accagcatcaaaggcttttatacaagtggagcggctccttccgtgagtgcgaggcacgcc
ctcatcatggatgaggtcgatggcatggcaggcaatgaagacaggggtggaattcaggag
ctaataggcctgataaagcatactaaaattcccatcatttgtatgtgcaatgatagaaac
caccccaaaattcgctcattggttcattattgttttgatcttcgtttccaaagacctcga
gttgaacagattaagagtgcaatgctgtctattgcatttaaagagggtttaaaaatcccc
cctccagctatgaatgaaataattttgggagctaatcaagatgtcagacaggttttacac
aatctcagtatgtggtgtgcacaaagtaaggccctgacctatgaccaagccaaggctgat
tctcagagggctaagaaggatatcagactgggcccatttgatgtcactcggaaagtgttt
gcagctggagaggagactgcacacatgtcactgatggacaagtcagatctcttcttccat
gactattccatagcacccctctttgtccaggagaactacctgcatgtaaagcctgtggct
gcaggaggtgacatgaaaaagcacttgatgcttttaagccgggcagcagatagcatatgt
gacggtgacttagtggacaatcagatccggagtaagcaaaactggagtcttctgcccacc
caggccatctatgccagtgttcttcctggagagttgatgcggggctacatgactcagttt
ccgagcttcccgagctggctggggaagcactcgtctacgggcaaacatgatcggattgtt
caggacctatccttgcacatgagtcttagaacttactccagcaaaaggacagtgaacatg
gattacctgtcacacatcagagacgcacttgtacgacccttgacctcacaaggggtagaa
ggggctcagcatgtcatcaaacttatggacacatactatctgatgaaagaagattttgag
aacatcatggaagttagcagctgggggggcaagcccagtgccttttccaagctggatccc
aaggtgaaagcggccttcacaagagcctacaataaggaggcccacctgaccccatactca
cttcaggtagtaaagacatcgaggctcagcacgggtccagcactggattctgagtacagt
gaggagttccaggaagatgacactcagtctgagaaagagcaggatgcagtggagactgac
gccatgatcaagaaaaagacaagatcttcaaaaccttcaaagtcagaaagagagaaggag
tccaaaaaaggaaaaggaaagaattggaagaaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (4)   
   OC (1)   
Protein sequence (8)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (35)   
   RefSeq(nuc) (5)   
   GenBank (15)   
   EMBL (15)   
Protein domain (22)   
   Pfam (22)   
All databases (108)   

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