KEGG   Mus musculus (house mouse): 20019
Entry
20019             CDS       T01002                                 
Symbol
Polr1a, 194kDa, 2900087K15Rik, 3010014K16Rik, RPA194, Rpo1-4, mRPA1
Name
(RefSeq) polymerase (RNA) I polypeptide A
  KO
K02999  DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    20019 (Polr1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmu03021]
    20019 (Polr1a)
Enzymes [BR:mmu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     20019 (Polr1a)
Transcription machinery [BR:mmu03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     20019 (Polr1a)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1 DUF2201_N
Other DBs
NCBI-GeneID: 20019
NCBI-ProteinID: NP_033114
MGI: 1096397
Ensembl: ENSMUSG00000049553
UniProt: O35134 Q3TU49 Q3UHI3
Position
6:71886037..71956419
AA seq 1717 aa
MLASKHTPWRRLQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADS
KEVCATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLL
ISQLRVLEVGALQAVYELERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTH
VKNVCESRSKLVAQFWKTHMAAKQCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQEGT
ELPEGVPEAPGIDKAQMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFN
PSMFFLDFIVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPC
EMTELTIDKENDSSVAIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEK
YPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVT
PWNVQELRQAVINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTPATGAPKPQ
GTKVVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDE
MNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQY
MELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLNLSGKAKIGS
KAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGET
SGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSL
PETASCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACMPLGLHRQFPENN
LQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTG
RFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGS
VVQFLYGEDGLDIPKTQFLQPKQFPFLAGNYEVIMKSKHLHEVLSRADPQKVLGHIKAIK
KWHHKHSGALLRKGAFLSFSQKIQAAVKALNLKGSIQNGRSPETQQMLQMWYDLDEESRW
KYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLR
TLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILM
VASANIKTPMMSVPVFDTKKALKKVKSLKKRLTRVCLGEVLQKVDIQESFCMGEKRNKFQ
VYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKKKNKASAFRNVNSRRAT
QKDLNDTEDSGRSQREEERDEEEEGNIVDAEAEEGDADASDTKRKEKQEEEVDYESEEEG
EEEEEEEVQEEGNIKGDGVHQGHEPDEEEHLGLEEEESSQKPPRRHSRPQGAEAIKRRIQ
AVRESYSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHKAIVYTTKGITRCL
LNETTNSKNEKELVLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEK
EIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSSSPLQQMTFETSFQFLKQ
ATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQPLR
NT seq 5154 nt   +upstreamnt  +downstreamnt
atgctggcctccaagcacacaccatggaggcggcttcagggcatttccttcggaatgtat
tcggccgaagagctcaagaagttaagtgttaaatccattacaaatcctcgatacgtggac
tacctgggaaacccttcagcaaatggcctgtatgatttggctttgggtcctgcagattcc
aaagaagtatgcgctacctgcgtgcaggacttcaacaactgctctggacacctgggccac
attgatctcccgctcacagtctacaaccctttcctctttgataaactctacctgctgctt
cgaggctcctgtttgagttgccacatgctgacttgtcctcgggctgcaatttacctgttg
atctcccagctgagggtcctggaagttggagccctgcaagcagtctacgagcttgagcga
attctcagcaggtttctggaagaaactggagatccttccgccttcgaaattcaagaagag
ttagaagaatacacaagcaaaattctgcagaacaacctcttggggtcccagggcacacat
gtgaaaaatgtgtgcgagagcagaagcaaacttgtcgctcagttctggaagacacacatg
gctgcgaagcagtgtccacactgcaagacgggacggtcggtggttcgaaaggagcacaat
agtaaactaatcatcacatacccagccacggtgcacaagaaatcagaccaggagggcaca
gaactcccagaaggagtgccggaagctccaggaattgacaaggctcagatggggaaacga
gggtacctgaccccaagcagcgcccaagaacaccttttcgccatttggaagaatgaagga
ttctttctgaattatcttttttcgggattggatgatattggcccagagtccagtttcaac
cccagtatgttctttctagacttcatagtcgtaccgccatccaggtaccgtcccgtcaat
cgcctgggtgaccagatgttcactaatggccagacagtaaacttgcaagctgtcatgaag
gatgcagttttgatccggaaacttctggcgttgatggcccaagaacagaaactgccctgt
gagatgacagaactcaccatagacaaggaaaatgactcctcagtggctatcgaccgatcc
ttcctgggtttgcttccaggcccgtctctcacagataaactttacaacatttggattcgc
cttcagagccacgtcaatattgtgtttgacagtgagatggacaaattgatgttggaaaag
taccctggcataagacagatcctagagaagaaggaaggcctgttccggaagcacatgatg
ggaaagcgagttgactacgcagcccgctcggtcatctgcccagacatgtacatcaacacc
aatgagatcggaatccccatggtatttgccacaaaactgacttaccctcagccagttacc
ccctggaacgtgcaggaactgagacaggcagtcatcaatggacccaatgtgcacccagga
gcctccatggtcatcaacgaggatggcagtcgcacagccctgagctcagtggatgctgcg
cagcgggaagctgtggccaaacagctcctgacaccagccacaggggctccgaagcctcag
gggacaaaagttgtgtgccggcatgtgaaaaatggggacatcctcctcctgaaccgacag
cctaccttgcacagaccctccatccaggcccaccgtgcccgcattctgcctgaagaaaaa
gtcctacgccttcactatgccaactgcaaggcctacaatgctgactttgatggagatgag
atgaacgcccacttcccccagagtgagttgggccgagctgaagcctatgtcctggcctgc
actgatcagcagtatcttgttcccaaggatggccagccattggcaggactgatccaagat
cacatggtttcaggtgcaaacatgaccattcggggatgctttttcacccgggaacagtac
atggaactggtgtaccgagggctcacagacaaagtgggacgcgtgaagctctttcctccc
gccatcctgaagcccttcccactgtggacaggaaaacaggttgtgtcgaccctcctcata
aacataattccagaggactacgcccccctgaacttatctggaaaggcaaaaattggcagc
aaagcctgggtgaaggaaaagccacggcctatccctgactttgacccggactccatgtgt
gagtcccaggtgatcatcagggaaggagagctgctctgcggagtgctggacaaggcacac
tatgggagctctgcctacggcctggtccactgctgctatgagatctatgggggtgagacc
agcggcagggttctcacctgcctagcccgcctcttcactgcctacctccagctctataga
ggtttcaccttgggtgtagaagacattttggttaagccaaatgcagatgtggtgagacag
cgtatcattgaagaatctacccagtgtggaccccaggctgtcaaggctgcattgagcctg
ccagaaactgcatcatgtgatgaaatccaagggaaatggcaggatgcccatctgagcaaa
gaccagagggattttaacatgattgatatgaagttcaaggaggaagtgaaccattacagc
aatgagattaacaaggcatgtatgcctcttggcttgcacagacagttccccgaaaacaac
ctgcagatgatggtgcagtcaggagccaaagggtcaaccgtgaacacgatgcaaatctct
tgcctgctgggccaaattgaattggaaggtcggagacccccactgatggcgtctggcaag
tcactgccctgctttgagccttacgagttcacccccagggctggtggctttgtcactgga
aggtttcttaccggtatcaggcctcctgagttcttcttccactgcatggcaggacgagaa
ggcctggtggacactgctgtcaaaaccagccgttctggctatctccaaaggtgtatcatc
aagcacctggaggggctggtcatccagtacgatctgacggtccgtgacagcgatggcagc
gtggtccagttcctgtatggggaggacggcctggacatccccaagacacagttcctacag
cccaagcagttcccctttctggccggcaattatgaggtgataatgaaatccaagcatctt
catgaagttttatccagagcagatccccagaaagtgctcggccacatcaaagccattaaa
aaatggcatcacaagcattccggtgccctgctgaggaaaggcgccttcctcagtttttcc
cagaagatccaggcagctgtgaaagctttgaacctaaagggcagtatccagaatggccgc
agccccgagacccagcagatgttacagatgtggtatgacttggatgaagagagccgatgg
aaataccagaagagggctgccccttgtcccgaccctagcctttctgtgtggcgcccagac
atctactttgcatctgtgtctgaaacatttgaaaagaagattgatgacttcagtcaggaa
tgggcagctcaagcagagaggagttacaagaaatcagagctttccctcgacaggctgaga
accttactgcagctgaagtggcagcgctcactgtgtgacccaggcgaggctgttggcctc
ctggctgcccagagcatcggagagccctccacacagatgacactgaacaccttccacttt
gcaggcagaggcgagatgaacgtcaccctgggcattccaagattgagggagattctcatg
gtggccagtgccaacatcaaaacgcccatgatgagtgtgcctgtgttcgacaccaagaaa
gcattgaagaaagtgaagagtctaaagaagaggctcaccagagtgtgcctgggggaggta
ttgcagaaagttgacatccaggagtccttctgtatgggagaaaaacggaataagttccag
gtgtatgagctccggtttcagttcctgccacatgcatattaccagcaggagaagtgcctg
agacccgaggacatcttgcacttcatggaaaccagattctttaagctactaatggaagct
atcaaaaagaagaaaaacaaagcatcagccttcagaaatgtgaattcgaggagagctaca
cagaaggacctcaatgacactgaggactcggggaggagtcagagagaggaggaaagggat
gaggaagaggaggggaacattgtggatgctgaagctgaggagggcgatgcagacgcttct
gacaccaaacgcaaggagaagcaagaagaagaggttgactatgagagtgaggaagaagga
gaggaggaagaggaggaggaggtacaagaagaagggaacatcaaaggcgacggtgtccac
cagggccatgagccagatgaggaagaacatttaggcctcgaggaggaggagtcatcccag
aagcctccccgccgccactccaggcctcagggagctgaggccataaaacgccggatccag
gctgtacgggagtcctactcgttcatcgaggactaccagtatgacacagaggagagcctg
tggtgtcaggtgactgtgaagctcccactgatgaagattaattttgacatgagctccttg
gttgtgtccttggcccacaaagccattgtctatacgaccaagggcatcactcggtgcctc
ctgaacgaaacgaccaacagtaagaatgagaaggagcttgtactgaacacggagggaatc
aaccttcccgagctgttcaagtactccgagatactggacctgcgccgcctctactccaat
gacatccacgccatggccaatacttatggcatcgaggctgcgttgcgggtgatagagaag
gagattaaagatgtgtttgctgtgtatggcattgcagttgatcctcgccatctctccctg
gtggctgattacatgtgttttgagggggtttataagccactcaatcgctttgggatccag
tcaagctcctcccctttgcagcagatgacatttgaaaccagcttccagtttctgaaacag
gccaccatgatgggatcccatgatgaactcaagtcaccttccgcctgcctcgtggtggga
aaggttgtcaaaggcgggacaggcctgtttgagctcaagcagcccctaagatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (6)   
   UniProt (3)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (38)   
   RefSeq(nuc) (2)   
   GenBank (18)   
   EMBL (18)   
Protein domain (6)   
   Pfam (6)   
All databases (90)   

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