KEGG   Mus musculus (house mouse): 20265
Entry
20265             CDS       T01002                                 
Symbol
Scn1a, B230332M13, Nav1.1
Name
(RefSeq) sodium channel, voltage-gated, type I, alpha
  KO
K04833  voltage-gated sodium channel type I alpha
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04728  Dopaminergic synapse
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09150 Organismal Systems
  09156 Nervous system
   04728 Dopaminergic synapse
    20265 (Scn1a)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:mmu04040]
    20265 (Scn1a)
Ion channels [BR:mmu04040]
 Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   20265 (Scn1a)
SSDB
Motif
Pfam: Ion_trans Na_trans_cytopl Na_trans_assoc PKD_channel GPHH ATP-synt_B IQ Zip FUT8_N_cat Pns11_12
Other DBs
NCBI-GeneID: 20265
NCBI-ProteinID: NP_001300926
MGI: 98246
Ensembl: ENSMUSG00000064329
UniProt: A2APX8
Position
2:complement(66101125..66271181)
AA seq 2009 aa
MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKN
LPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQWPPTNASLEEHSIEKNITMDY
NGTLVNETVFEFDWKSYIQDSRYHYFLEGVLDALLCGNSSDAGQCPEGYMCVKAGRNPNY
GYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQQAAATTASEHSREPSAAGRLS
DSSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDDDEFHKSESEDSIRRKGFRFSIEG
NRLTYEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFED
NESRRDSLFVPRRHGERRNSNLSQTSRSSRMLAVFPANGKMHSTVDCNGVVSLVGGPSVP
TSPVGQLLPEVIIDKPATDDNGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASIL
TNTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHIVNLVVMDPFVDLAITICIVL
NTLFMAMEHYPMTEHFNHVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIV
TLSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAII
VFIFAVVGMQLFGKSYKDCVCKIATDCKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM
EVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMH
KGIAYVKRKIYEFIQQSFVKKQKILDEIKPLDDLNNRKDNCISNHTTEIGKDLDCLKDVN
GTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEE
SKEKLNESSSSSEGSTVDIGAPAEEQPVIEPEETLEPEACFTEGCVQRFKCCQISVEEGR
GKQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFT
YIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRA
LRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTT
TGDIFEISEVNNHSDCLKLIERNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYA
AVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFM
TEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMV
ETDDQSDYVTSILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMF
LAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLV
MFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPD
CDPNKVNPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPL
SEDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMVSGD
RIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSAV
IIQRAYRRHLLKRTVKQASFTYNKNKLKGGANLLVKEDMLIDRINENSITEKTDLTMSTA
ACPPSYDRVTKPIVEKHEQEGKDEKAKGK
NT seq 6030 nt   +upstreamnt  +downstreamnt
atggagcaaacagtgcttgtaccaccaggacctgacagcttcaacttcttcaccagagaa
tcccttgcagctattgaaaggcgcattgcagaagagaaggctaagaatcccaagccagac
aaaaaagatgatgatgaaaatggcccaaagccaaacagtgacttggaagctgggaagaac
cttccatttatctatggagacattcctccagagatggtgtcggagcctctggaggacctg
gacccctactatatcaataagaagacttttatagtattgaataaagggaaggccatcttc
cggttcagtgccacctccgccctgtacattttaacacccttcaatcctcttaggaaaata
gctattaagattttggtacactcattattcagcatgttaatcatgtgcactattttgaca
aactgtgtatttatgacaatgagtaaccctcccgactggacaaagaatgtggagtacacc
ttcacaggaatatatacttttgaatcactaataaaaattattgcaaggggcttctgttta
gaagattttactttccttcgcgacccatggaactggctggacttcactgtcattacattc
gcatatgtgacggagtttgtggacctgggcaatgtctcagcattgagaacattcagagtt
cttcgagcattgaaaactatttcagtcattccaggcctgaagaccatcgtgggggccctg
atccagtcggtgaagaagctgtctgacgtcatgatactcactgtgttctgtctcagtgtg
ttcgcactcatcgggttgcagctcttcatgggcaacctgaggaataaatgtgtacagtgg
cctcccaccaacgcttcccttgaggaacatagcatagagaagaatataactatggattac
aatggcacacttgtaaatgaaaccgtgttcgagtttgactggaaatcatacattcaagac
tcaagatatcattatttcctggagggtgttttagatgcactgctgtgtggaaatagctct
gatgcaggccaatgtccagaaggatatatgtgtgtaaaagctggtagaaaccctaattat
ggttacacaagctttgataccttcagttgggcatttttgtccctgtttcgactgatgact
caggacttctgggaaaatctataccaactgacattgcgtgctgctggcaaaacctacatg
atattttttgtgctggtcattttcttgggctcattctacctgataaacttgatcctggct
gtggtggccatggcctatgaggagcagaatcaggccacactggaggaggctgaacagaaa
gaggcagaatttcagcagatgttggagcaacttaagaagcagcaagaggctgcacagcag
gcagcggctacaacagcctcagaacattccagggagcccagtgcagcaggcaggctctca
gatagctcttcagaagcctctaagttgagttcgaagagtgctaaagaaagacgaaatcgg
aggaaaaaaaggaaacagaaagagcagtctggaggagaagagaaagatgatgatgaattc
cacaagtctgagtctgaagacagcatcaggaggaaggggtttcgcttctccatagaaggg
aatagactgacatatgaaaagaggtactcttccccgcatcagtctctgttaagcattcgt
ggttccctgttctccccaagacgcaatagcagaacaagtcttttcagctttagagggcga
gccaaggatgtggggtctgagaatgactttgctgatgatgaacacagcacctttgaggat
aatgagagccgtagagactcactgttcgttccccgaagacacggagagcgacgcaacagt
aacctgagccagaccagcaggtcctcccgaatgctggcggtgtttccagccaatgggaag
atgcacagcacggtggattgcaatggtgtggtttccttggttggtggaccctcagttccc
acatcgccagttggacagcttctgccagaggtgataatagataagccagctactgatgac
aatggaacaaccactgaaactgagatgagaaagaggaggtcgagctctttccatgtttcc
atggactttctagaagatccttcccagaggcaaagggcaatgagcatagccagcatctta
acaaatacagtagaagaactagaagaatccaggcagaaatgtccaccctgttggtataaa
ttttccaacatattcttaatttgggactgttctccatattggctgaaagttaaacatatt
gtcaacctggtggtgatggacccatttgttgatctggccattaccatctgcattgtgtta
aatacgctcttcatggctatggagcactaccccatgactgaacatttcaaccatgttctt
acagtgggaaacttggtcttcactgggattttcacagcagaaatgttcctgaaaatcatc
gcaatggatccttactattacttccaagaaggctggaatatctttgatggtttcattgtg
acactcagcctggtagaacttggccttgccaatgtggaaggattgtcagttctccgttca
tttcgactgctccgagtgttcaagttggcaaagtcttggcccacactgaatatgctcatt
aagatcattggtaactcggtgggagcactgggcaacctgactctggtgttggccatcatt
gtctttatttttgccgtggttggcatgcagctgtttggaaaaagttacaaagattgtgtc
tgcaaaattgccactgactgcaaactcccacgttggcacatgaacgacttcttccactcg
ttcctgatcgtgttccgcgtgctgtgtggggagtggatagagaccatgtgggactgcatg
gaggtggcaggacaagctatgtgccttactgtcttcatgatggtcatggtgattgggaac
cttgtggtcttgaacctctttctggccttgcttctgagctcatttagtgcagacaacctt
gcagccactgatgatgacaatgagatgaacaacctgcagattgctgtggacaggatgcac
aaaggaatagcttatgtaaaaagaaaaatatatgaattcattcaacaatcctttgttaag
aaacagaagattctagatgaaattaagccacttgatgatctaaacaacagaaaagacaat
tgtatctctaaccacacaacagaaattgggaaagatctggactgtctgaaagatgtgaat
ggaaccacaagtggcatagggacgggcagcagtgtggagaagtacatcattgatgagagt
gattatatgtcattcataaacaaccccagcctcactgtgactgtgcccattgctgtggga
gagtctgactttgagaacttaaacacagaagactttagcagtgaatcagatctagaagaa
agcaaagagaaactcaacgaaagcagtagctcctcagagggaagcacagtagacattggg
gcgcctgcagaggaacagcctgtcattgaaccagaagaaacccttgagcccgaagcttgc
ttcactgaaggctgtgtccagagattcaagtgctgtcaaatcagcgtggaagaaggaaga
gggaaacagtggtggaacctacggaggacgtgcttccgaatagttgaacacaactggttt
gagaccttcattgtgttcatgattctcctgagtagtggtgccctggcctttgaggatata
tatattgatcagcgaaagacgatcaaaaccatgctggagtatgctgacaaagtcttcact
tacattttcatcctggagatgctcctcaaatgggtggcctatggctatcaaacatacttc
accaatgcctggtgttggctagacttcttaattgttgatgtttcattggtcagtttaaca
gcaaatgccttgggttactctgaactcggggccatcaaatccctaaggacactaagagct
ctgagacccctaagagccttatcacgatttgaagggatgagggtggttgtgaatgccctg
ttaggagcaattccatccatcatgaatgtgcttctggtttgccttatattctggctaatt
ttcagcatcatgggcgtaaatttgtttgctggcaaattctaccactgtgttaacaccaca
actggtgacatatttgagatcagcgaagtcaataatcattctgattgcctaaaactaata
gaaagaaatgagaccgcccggtggaaaaatgtgaaagtaaactttgataatgtaggattt
gggtatctttctttgcttcaagttgccacatttaagggctggatggatatcatgtatgct
gcagttgattccagaaatgttgaactacagcctaagtatgaggaaagcctgtacatgtat
ttgtacttcgtcatcttcatcatcttcgggtccttctttaccctgaacctgtttattggt
gtcattatcgacaatttcaaccagcaaaagaagaagtttggaggtcaagacatctttatg
acagaagaacagaagaaatactataatgcaatgaagaaattaggatcaaaaaagccacaa
aagcctatccctcgacctggaaacaaatttcaaggaatggtttttgactttgtaaccaga
caagtgtttgatatcagcatcatgatcctcatctgtctgaacatggtgaccatgatggtg
gaaacggatgaccagagcgattatgtgacaagcattttgtcacgcatcaacctggtgttc
atcgtcctgttcaccggcgagtgtgtgctcaagctcatctcgctccgccattattatttc
accattggatggaacattttcgattttgtggtggtcatcctctccattgtagggatgttt
cttgcggagctaatagaaaagtattttgtgtctcctaccctgttccgagtcatccgcctg
gccaggattggacgaatcctacgcctgatcaaaggtgccaaggggatccgcacgctgctc
tttgctctgatgatgtcccttcctgcgctgtttaacatcggcctcctgctttttctcgtc
atgttcatctacgccatctttgggatgtccaactttgcctatgttaagagggaagttggg
attgatgacatgttcaactttgagaccttcggcaacagcatgatctgcctgttccaaatc
accacctctgcgggctgggatggactgctggcccccatcctcaacagcaaaccccctgac
tgtgaccctaataaagttaaccctggaagctcggtgaagggagactgtgggaacccatct
gtggggattttcttttttgtcagctacatcatcatatccttcctggttgtggtgaacatg
tacattgctgtcatcctggagaacttcagcgttgccacagaagaaagtgcagagcctctg
agtgaggacgactttgagatgttctacgaggtctgggagaagttcgaccctgacgccacc
cagttcatggaatttgaaaaattatctcagtttgcagctgctctagaaccccctctcaat
ttgccacaaccaaacaaacttcagctcattgccatggacctgcccatggtgagtggagac
cgcatccactgcctggacatcttatttgcttttacaaagcgggtgttgggtgagagtgga
gagatggatgctcttcgaatccagatggaagagcggttcatggcttccaacccctccaag
gtctcttatcagcccatcactactacattaaaacgcaaacaagaggaggtgtcagctgtt
atcattcagcgagcttataggcgccaccttttgaagcgaacagtaaaacaagcttcattc
acatacaataagaacaaactcaaaggtggggctaatcttcttgtaaaagaagacatgctc
attgacagaataaacgaaaactctattacggagaaaactgacctgacaatgtccacagca
gcttgtccgccctcctacgatcgggtgacaaagccaatcgtggagaaacacgagcaggaa
gggaaggatgaaaaagccaaagggaaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (29)   
   RefSeq(nuc) (7)   
   GenBank (11)   
   EMBL (11)   
Protein domain (10)   
   Pfam (10)   
All databases (67)   

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