KEGG   Mus musculus (house mouse): 20348
Entry
20348             CDS       T01002                                 
Symbol
Sema3c, 1110036B02Rik, SemE, Semae
Name
(RefSeq) sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
  KO
K06840  semaphorin 3
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04360  Axon guidance
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09150 Organismal Systems
  09158 Development and regeneration
   04360 Axon guidance
    20348 (Sema3c)
SSDB
Motif
Pfam: Sema Ig_3 I-set PSI ig Ig_6 Ig_2 V-set
Other DBs
NCBI-GeneID: 20348
NCBI-ProteinID: NP_038685
MGI: 107557
Ensembl: ENSMUSG00000028780
UniProt: Q62181
Position
5:17779814..17935266
AA seq 751 aa
MAFRAICVLVGVFICSICVRGSSQPQARVYLTFDELRETKTSEYFSLSHQQLDYRILLMD
EDQDRIYVGSKDHILSLNINNISQEPLSVFWPASTIKVEECKMAGKDPTHGCGNFVRVIQ
TFNRTHLYVCGSGAFSPVCTYLNRGRRSEDQVFMIDSKCESGKGRCSFNPNVNTVSVMIN
EELFSGMYIDFMGTDAAIFRSLTKRNAVRTDQHNSKWLSEPMFVDAHVIPDGTDPNDAKV
YFFFKERLTDNNRSTKQIHSMIARICPNDTGGQRSLVNKWTTFLKARLVCSVTDEDGPET
HFDELEDVFLLETDNPRTTLVYGIFTTSSSVFKGSAVCVYHLSDIQTVFNGPFAHKEGPN
HQLISYQGRIPYPRPGTCPGGAFTPNMRTTKDFPDDVVTFIRNHPLMYNSIYPIHRRPLI
VRIGTDYKYTKIAVDRVNAADGRYHVLFLGTDRGTVQKVVVLPTNSSASGELILEELEVF
KNHVPITTMKISSKKQQLYVSSNEGVSQVSLHRCHIYGTACADCCLARDPYCAWDGHSCS
RFYPTGKRRSRRQDVRHGNPLTQCRGFNLKAYRNAAEIVQYGVRNNSTFLECAPKSPQAS
IKWLLQKDKDRRKEVKLNERIIATSQGLLIRSVQDSDQGLYHCIATENSFKQTIAKINFK
VLDSEMVAVVTDKWSPWTWAGSVRALPFHPKDILGAFSHSEMQLINQYCKDTRQQQQLGE
EPQKMRGDYGKLKALINSRKSRNRRNQLPES
NT seq 2256 nt   +upstreamnt  +downstreamnt
atggcattccgggcgatttgtgtgttggttggagtatttatttgttccatttgtgtacga
ggatcttcccagccccaagcaagagtttatttaacatttgatgagcttcgagaaaccaaa
acctctgagtactttagtctgtcccaccagcagttagactacagaatattgctgatggat
gaagatcaagaccggatatatgtggggagcaaagaccacatcctgtctttgaatatcaac
aatatcagtcaagaacctttgagtgttttctggccagcatcaacaatcaaagttgaagag
tgcaaaatggctggcaaagatcctacacatggctgtggaaatttcgtccgggtgattcag
acattcaaccgtactcacctgtatgtctgtgggagtggagcgttcagcccagtgtgcacc
tacctgaaccggggaaggaggtcagaggaccaggtattcatgatcgactctaagtgtgaa
tctggcaaaggacgatgctctttcaacccgaatgtgaacactgtgtctgttatgatcaat
gaggaactcttctcaggaatgtatatagacttcatgggaacagatgctgctattttccga
agtttaactaagaggaatgcagttcgaactgatcaacataattcaaaatggctgagtgaa
cccatgtttgtggacgcacatgtgatcccagatggcactgatccaaatgatgctaaggtc
tatttcttcttcaaagaaagactgactgacaacaataggagcacaaaacagattcattcc
atgattgcaagaatatgccctaatgacactggtggacaacgtagtcttgtcaacaagtgg
accacattcttaaaggcaagacttgtatgctcagtcacagatgaagatggcccagagaca
cattttgatgaactagaggatgtctttctgctggaaactgacaatccaaggacaacactc
gtgtatggcatcttcaccacatcaagctctgtttttaagggatcggcagtgtgtgtgtat
catttatctgatatacagactgtattcaatgggccctttgcccacaaggaagggcccaat
caccagctgatctcctatcaaggtagaatcccatatcctcgcccaggaacttgcccagga
ggggcctttacacccaatatgagaaccaccaaggacttcccagatgacgttgtcactttt
attcggaaccaccctctcatgtacaattccatctaccccatccacagaaggcctctgata
gtccgcataggcactgactacaagtacacaaagattgctgtggaccgtgtcaacgctgct
gatgggagataccacgttctgtttctgggcacagatcggggcaccgtgcagaaggtcgta
gtccttcctaccaatagctctgccagtggggaactcatcctggaggagctggaagtcttc
aagaatcatgttcccataacaacaatgaaaatctcatccaaaaagcaacagttgtacgtg
agctccaatgagggggtttcccaagtctctctgcatcgctgccatatctacggcacagcc
tgtgcggactgctgcttggcgagggatccatactgtgcctgggatggccactcttgctct
aggttctaccccactgggaagcggaggagccgaagacaagatgtgagacatggaaaccca
ctgacacaatgccgagggttcaatctgaaagcatacagaaatgcagctgaaattgttcag
tatggagtaagaaataacagcactttccttgagtgtgctcccaagtctccacaggcatct
atcaagtggttgctgcagaaagacaaagacaggaggaaggaggttaaactgaacgagcgc
attatagctacttcccaaggactactgattcgctctgttcaagattctgaccaaggactc
taccactgcattgccactgagaacagcttcaaacagaccatagccaagatcaacttcaaa
gttttagattcagaaatggtggccgttgtgacagacaagtggtccccgtggacatgggct
ggctctgtgagggctctacccttccatccaaaggacatcctgggggcattcagccactcg
gaaatgcagctcatcaatcagtactgcaaagacacccggcagcagcagcagctgggggaa
gaaccacagaagatgagaggggactatggcaagctgaaggctctcatcaacagcaggaaa
agcagaaacaggaggaatcagcttccagagtcataa

  All links  
Ontology (1)   
   KEGG BRITE (1)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (15)   
   RefSeq(nuc) (1)   
   GenBank (7)   
   EMBL (7)   
Protein domain (8)   
   Pfam (8)   
All databases (39)   

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