KEGG   Mus musculus (house mouse): 20356
Entry
20356             CDS       T01002                                 
Symbol
Sema5a, 5930434A13, 9130201M22Rik, Semaf, semF
Name
(RefSeq) sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
  KO
K06841  semaphorin 5
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04360  Axon guidance
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09150 Organismal Systems
  09158 Development and regeneration
   04360 Axon guidance
    20356 (Sema5a)
SSDB
Motif
Pfam: TSP_1 Sema TSP1_spondin PSI TSP1_ADAMTS TSP1_CCN
Other DBs
NCBI-GeneID: 20356
NCBI-ProteinID: NP_033180
MGI: 107556
Ensembl: ENSMUSG00000022231
UniProt: Q3UPZ0
Position
15:32244959..32696487
AA seq 1074 aa
MKGACILAWLFSSLGVWRLARPETQDPAKCQRAEHPVVSYKEIGPWLREFRAENAVDFSR
LTFDPGQKELVVGARNYLFRLELEDLSLIQAVEWECDEATKKACYSKGKSKEECQNYIRV
LLVGGDRLFTCGTNAFTPVCTIRSLSNLTEIHDQISGMARCPYSPQHNSTALLTASGELY
AATAMDFPGRDPAIYRSLGTLPPLRTAQYNSKWLNEPNFVSSYDIGNFTYFFFRENAVEH
DCGKTVFSRAARVCKNDIGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQGTFFLPEL
DLIYGIFTTNVNSIAASAVCVFNLSAISQAFNGPFKYQENSRSAWLPYPNPNPNFQCGTM
DQGLYVNLTERNLQDAQKFILMHEVVQPVTTVPSFMEDNSRFSHLAVDVVQGRETLVHII
YLATDYGTIKKVRAPLSQSSGSCLLEEIELFPERRSEPIRSLQILHSQSVLFVGLQEHVA
KIPLKRCHFHQTRSACIGAQDPYCGWDAVMKKCTSLEESLSMTQWDQSIPTCPTRNLTVD
GSFGPWSPWTPCTHTDGTAVGSCLCRSRSCDSPAPQCGGWQCEGPRMEITNCSRNGGWTP
WTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYCNEHLLCPPHVFWTGWG
PWERCTAQCGGGIQARRRTCENGPDCAGCNVEYQPCNTNACPELKKTTPWTPWTPVNISD
NGGHYEQRFRYTCKARLPDPNLLEVGRQRIEMRYCSSDGTSGCSTDGLSGDFLRAGRYSA
HTVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKFGGMPCLGPSLEFQECNILPCPV
DGVWSCWSSWSKCSATCGGGHYMRTRSCSNPAPAYGGDICLGLHTEEALCNTQTCPESWS
EWSDWSVCDASGTQVRARQCILLFPVGSQCSGNTTESRPCVFDSNFIPEVSVARSSSVEE
KRCGEFNMFHMMAVGLSSSILGCLLTLLVYTYCQRYQQQSHDATVIHPVSPAALNSSITN
HINKLDKYDSVEAIKAFNKNNLILEERNKYFNPHLTGKTYSNAYFTDLNNYDEY
NT seq 3225 nt   +upstreamnt  +downstreamnt
atgaagggagcctgcatccttgcatggctgttctcaagcctgggagtgtggagacttgct
aggcccgagacccaggaccctgccaagtgccagagagctgagcaccctgtcgtctcttac
aaagaaattggcccctggttacgggagttcagagccgagaatgctgtggatttctcgagg
ttaacatttgacccaggacagaaagaacttgtcgtaggagcgagaaactatctcttcaga
ttagagcttgaggatctgtctctcatccaggctgtggagtgggagtgtgacgaagccacc
aagaaggcctgttacagcaagggcaaatcgaaggaggaatgtcagaactacatacgagtg
ctcttagttggtggggaccggctattcacctgtgggaccaatgccttcacacctgtctgt
accatccgctcgttaagtaacctgactgagatccatgatcagatcagtggcatggcccgc
tgtccctacagtccccagcacaattctaccgccctactcactgccagtggtgagctctat
gctgcaacagccatggatttcccagggcgagatccagccatttaccgaagtctgggcact
ttgcctcctcttcgaactgcacagtacaactccaaatggctcaatgaaccaaactttgtg
tcttcctacgacatcggaaatttcacctacttcttcttccgagaaaacgccgtggaacat
gactgtgggaagacggtgttctccagggctgcccgggtctgtaaaaatgacattggaggg
cgatttcttctggaggacacctggactaccttcatgaaggctcgcctcaactgctcccgg
cctggtgaggtgcccttctactacaatgagctgcagggtactttcttcctgccggagctg
gatctgatctatggtatcttcaccaccaatgtaaacagcatcgctgcctctgctgtctgt
gtcttcaacctgagcgccatctcacaggccttcaatggacccttcaagtaccaagaaaac
tctcgctcagcctggctgccttatcccaaccccaaccccaattttcagtgcggcaccatg
gaccagggcctgtacgtaaacctgacggaaagaaacctacaggatgctcagaagttcatt
ctgatgcatgaagtggtgcagccagtgaccacagtgccctctttcatggaggacaacagc
cgcttctcccacttagctgttgatgttgtgcaaggcagggagactctggtccacatcatt
tatctggccacagattatggcaccattaagaaagtacgagctcccctgagtcagagctca
ggcagctgtttgctggaagagattgagcttttcccagagaggaggagtgagcccatcagg
agcctgcagatcctccacagccagagtgtcctatttgtgggactacaggagcatgtggcc
aagatccccctgaagaggtgccacttccatcaaacacgcagtgcctgcattggcgctcag
gacccttactgtggctgggatgcggtgatgaagaaatgcaccagcctggaggagagtctg
agcatgacccagtgggatcagagcatccccacctgtccgaccagaaatctcactgtagat
gggagctttggcccatggtcaccgtggacaccctgtacacacactgatggcactgctgtg
ggctcctgcctctgccggtcccgctcctgtgacagcccagctcctcagtgtggtggttgg
cagtgtgagggccctagaatggagatcaccaactgttccaggaatggaggctggactccc
tggacctcctggtctccgtgcagcacgacctgtggcattggcttccaagtgcggcagcga
tcctgcagcaaccccacgcccaggcatggcgggcgcgtgtgcgtgggccagaacagggag
gaaagatactgcaatgaacatttgctctgcccaccacacgtgttctggacaggctgggga
ccttgggaacggtgcacagcccagtgcgggggtggcattcaagcccgccggaggacctgt
gaaaatgggcctgactgtgcaggatgcaatgtggaataccagccttgtaacaccaatgca
tgcccggagctgaagaagaccacaccctggacaccctggacccctgtcaacatctctgac
aatggaggtcactatgagcagcgtttccgctatacctgtaaagctcgcctgccagatcca
aatttgctggaagtaggaagacagaggatagaaatgcggtactgttccagcgatggaacc
agtggctgctccacagacggactttctggagactttctaagagctgggagatactctgct
catacagtcaatggggcatggtcagcctggacttcctggtcacagtgcagcagagactgc
agcaggggcattcggaaccggaagcgtgtttgcaacaacccagaacccaagtttgggggc
atgccatgccttggcccatcgctggagttccaggaatgcaacattttaccttgtccagtg
gatggtgtgtggtcttgctggtcatcctggtctaaatgttcagcaacctgtggaggtggc
cactacatgagaacccgttcttgttcgaatccagccccagcatatggaggggacatctgc
ctgggactgcacacagaagaggcactctgcaacacacagacctgcccagaaagctggtca
gagtggtcagactggtctgtgtgcgatgcatctggtacccaggtccgtgctcggcagtgc
atccttctgtttccagtgggcagccaatgttctggaaatactacagagagccggccttgt
gtatttgactctaatttcatcccagaagtatctgtggcaagatccagcagcgtagaagaa
aaaaggtgtggagagttcaacatgttccacatgatggccgtggggcttagcagttccatt
cttggctgcctcctcacactgcttgtctacacctactgccagaggtaccagcagcagtcc
catgatgcaactgtcatccaccctgtctctcctgccgccctcaacagcagcataactaac
cacatcaacaaactggacaaatatgattctgtggaggccatcaaggcatttaacaaaaac
aacttgatcctagaggagagaaacaaatacttcaacccacatctcactgggaagacctat
tccaacgcctactttacagatctcaacaattatgatgaatactag

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Ontology (1)   
   KEGG BRITE (1)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (10)   
   UniProt (1)   
   RefSeq(pep) (9)   
DNA sequence (43)   
   RefSeq(nuc) (9)   
   GenBank (17)   
   EMBL (17)   
Protein domain (6)   
   Pfam (6)   
All databases (89)   

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