KEGG   Mus musculus (house mouse): 20479
Entry
20479             CDS       T01002                                 
Symbol
Vps4b, 8030489C12Rik, Skd1
Name
(RefSeq) vacuolar protein sorting 4B
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03250  Viral life cycle - HIV-1
mmu04144  Endocytosis
mmu04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    20479 (Vps4b)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    20479 (Vps4b)
  09143 Cell growth and death
   04217 Necroptosis
    20479 (Vps4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mmu04131]
    20479 (Vps4b)
   03400 DNA repair and recombination proteins [BR:mmu03400]
    20479 (Vps4b)
Membrane trafficking [BR:mmu04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    20479 (Vps4b)
DNA repair and recombination proteins [BR:mmu03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    20479 (Vps4b)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_14 AAA_5 RuvB_N AAA_22 AAA_2 IstB_IS21 AAA_25 AAA_18 DUF815 AAA_33 nSTAND3 AAA_17 RNA_helicase AAA_24 PhoH AAA_7 Mg_chelatase ResIII AAA_28 NACHT Parvo_NS1 bpMoxR KAP_NTPase TPR_1 DUF5906 TPR_10
Other DBs
NCBI-GeneID: 20479
NCBI-ProteinID: NP_033216
MGI: 1100499
Ensembl: ENSMUSG00000009907
UniProt: P46467 Q3TN07 Q8BM73
Structure
Position
1:complement(106698518..106724455)
AA seq 444 aa
MASTNTNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA
KCTEYLDRAEKLKEYLKKKEKKPQKPVKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQL
QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK
SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL
PEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSAT
HFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSS
TKPTVNEQDLLKLKKFTEDFGQEG
NT seq 1335 nt   +upstreamnt  +downstreamnt
atggcgtccacgaacaccaacctgcagaaagcaatagatcttgcaagcaaagcagcccag
gaagacaaagctgggaactatgaggaagctcttcaactctaccaacatgctgtgcagtat
tttctccatgttgttaaatatgaagcacaaggtgataaagccaagcaaagtatcagggcc
aagtgtacagaatatctcgatagagcagaaaaactaaaggaatatctgaagaaaaaggag
aagaaaccacagaagcctgtgaaagaggaacagtcaggcccagttgatgagaaggggaat
gacagtgatggggaagcagaatctgatgatcctgaaaaaaagaaactgcagaatcaactt
caaggtgccattgttatagagcgaccaaatgtgaagtggagtgatgttgctggtctcgaa
ggagccaaagaagctcttaaagaggctgtgattctgcctattaagtttcctcatctgttt
acaggaaagcggacaccttggagaggaatcctattatttggaccaccaggaacaggaaaa
tcttatttggctaaagctgttgcaacggaagcaaacaactcaacatttttctcaatatct
tcctctgaccttgtgtctaagtggctgggggaaagcgaaaaactggttaagaacttattc
cagcttgccagagagaacaagccttctatcatcttcatcgatgagattgattctctgtgt
ggttccagaagtgagaatgagagcgaggctgcacggagaattaagacggagttcctggtt
caaatgcaaggagttggtgtggacaatgatggcattttggttctgggagctacaaatata
ccctgggttctggattctgcaattaggcgaagatttgagaaacgtatttatattcctttg
cccgaagcccatgcccgagcagccatgtttagactgcacttgggcagcactcagaacagc
ctcacagaagcagacttccaagaacttgggaggaagacggatggctattcaggagcagat
ataagtatcattgtacgggatgcacttatgcagcctgtgagaaaagttcagtcagctact
cacttcaaaaaggttcgaggaccctcaagagctgatcctaactgcattgtaaatgacctg
ctgacaccctgctctccgggagaccctggggctattgaaatgacatggatggatgttcct
ggagataaactcttggagccagttgtttccatgtgggatatgctgcggtccctgtccagc
acaaagccaacagtcaatgagcaggacttgttgaagctgaagaagtttacagaagatttt
ggccaggaaggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (5)   
   UniProt (3)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (19)   
   RefSeq(nuc) (1)   
   GenBank (9)   
   EMBL (9)   
3D Structure (3)   
   PDB (3)   
Protein domain (32)   
   Pfam (32)   
All databases (101)   

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