KEGG   Mus musculus (house mouse): 20587
Entry
20587             CDS       T01002                                 
Symbol
Smarcb1, Baf47, Ini1, SNF5/INI1, Snf5
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03082  ATP-dependent chromatin remodeling
mmu03250  Viral life cycle - HIV-1
mmu04714  Thermogenesis
mmu05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    20587 (Smarcb1)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    20587 (Smarcb1)
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    20587 (Smarcb1)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    20587 (Smarcb1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:mmu01009]
    20587 (Smarcb1)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmu03021]
    20587 (Smarcb1)
   03036 Chromosome and associated proteins [BR:mmu03036]
    20587 (Smarcb1)
Protein phosphatases and associated proteins [BR:mmu01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     20587 (Smarcb1)
Transcription machinery [BR:mmu03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     20587 (Smarcb1)
    SWI/SNF complex
     20587 (Smarcb1)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    20587 (Smarcb1)
   PBAF complex
    20587 (Smarcb1)
   SWI/SNF complex
    20587 (Smarcb1)
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd DUF1679
Other DBs
NCBI-GeneID: 20587
NCBI-ProteinID: NP_035548
MGI: 1328366
Ensembl: ENSMUSG00000000902
UniProt: Q9Z0H3 Q3UDA4 Q6ZWP4
Position
10:complement(75732603..75757448)
AA seq 385 aa
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
MEKKIRDQDRNTRRMRRLANTAPAW
NT seq 1158 nt   +upstreamnt  +downstreamnt
atgatgatgatggcgttgagcaagaccttcgggcagaagcccgtcaagtttcagctggag
gacgacggggagttctacatgatcggctccgaggtgggaaactacctgcgtatgttccga
ggttctctgtacaagagatacccctcactctggcggcgactagccactgtggaagaaagg
aagaaaatagtggcatcgtcacatggtaaaaaaacaaaacctaacactaaggatcatgga
tataccaccctggccaccagcgtgacactcctgaaagcctcagaggtagaagagatcctg
gatggcaatgacgagaagtacaaggctgtgtccatcagcacagagcccccgacctacctc
agggagcagaaggccaagaggaacagccagtgggtccccaccctgcccaacagctcccac
cacctggatgctgtgccctgttccaccaccatcaacaggaaccgcatgggtcgggacaag
aagagaaccttccccttgtgctttgatgaccacgacccagctgtgatccatgagaatgcg
tcacagcctgaggtgctggtgcccatccggctcgacatggagatcgacgggcagaagctg
cgagacgcttttacctggaacatgaatgagaagctaatgactcctgagatgttttcagaa
atactttgtgatgacctggatttgaatccactgacttttgtgccagctattgcctctgcc
attcgacagcagattgagtcctaccccacagacagcatcctagaggatcaatccgaccag
cgtgtcatcatcaagctgaacatccacgtggggaacatctccctggtggaccagtttgag
tgggacatgtcagagaaagagaactccccagagaagtttgccctgaagctgtgctcagag
ctgggcttgggcggggagtttgtcaccaccattgcatacagcatccgaggacagctgagc
tggcaccagaagacctatgccttcagtgagaacccacttcccacagtggagattgccatc
cgaaataccggagatgctgaccagtggtgccccctgctggagacactgactgatgccgag
atggagaaaaagatccgggatcaagataggaacacaaggcgaatgaggcgtcttgccaac
actgccccagcctggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (6)   
   UniProt (3)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (42)   
   RefSeq(nuc) (2)   
   GenBank (20)   
   EMBL (20)   
Protein domain (3)   
   Pfam (3)   
All databases (82)   

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