KEGG   Mus musculus (house mouse): 20588
Entry
20588             CDS       T01002                                 
Symbol
Smarcc1, BAF155, Rsc8, SRG3, msp3
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
  KO
K11649  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03082  ATP-dependent chromatin remodeling
mmu04714  Thermogenesis
mmu05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    20588 (Smarcc1)
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    20588 (Smarcc1)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    20588 (Smarcc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmu03021]
    20588 (Smarcc1)
   03036 Chromosome and associated proteins [BR:mmu03036]
    20588 (Smarcc1)
Transcription machinery [BR:mmu03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     20588 (Smarcc1)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    20588 (Smarcc1)
   PBAF complex
    20588 (Smarcc1)
   GBAF(ncBAF) complex
    20588 (Smarcc1)
SSDB
Motif
Pfam: SWIRM-assoc_2 SWIRM-assoc_3 SWIRM-assoc_1 SWIRM Myb_DNA-binding Myb_DNA-bind_6 DUF919 BRCT_2 SpeFL
Other DBs
NCBI-GeneID: 20588
NCBI-ProteinID: NP_033237
MGI: 1203524
Ensembl: ENSMUSG00000032481
UniProt: P97496 Q3UPK0
Position
9:109961129..110069773
AA seq 1104 aa
MAATAGGGPGAAAGAVGAGGAAAASGLAVYRRKDGGPASKFWESPDTVSQLDSVRVWLGK
HYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCHI
LGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLTRPNIYLIPDIDLKLA
NKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRRDKQVLVHWGFYPDSYD
TWVHSNDVDAEIEDAPIPEKPWKVHVKWILDTDVFNEWMNEEDYEVDENRKPVSFRQRIS
TKNEEPVRSPERRDRKASANSRKRKPSPSPPPPTATESRKKSGKKGQASLYGKRRSQKEE
DEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEEAVTTGGK
EDEDPSKGDPSRSVDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKS
KTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDP
ESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFGL
RTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF
LRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEE
FSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGSEEEKM
ETDPDGQQPEKAENKVENESDEGDKIQDRENEKNTEKEQDSDVSEDVKPEEKENEENKEL
TDTCKERESDAGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVE
TQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQ
QQHGQTPQQAHQHTGGPGMAPLGATGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGP
GSMMPGQPMPGRMIPAVAANIHPTGSGPTPPGMPPMPGNILGPRVPLTAPNGMYPPPPQQ
QQPPPPADGVPPPPAPGPPASATP
NT seq 3315 nt   +upstreamnt  +downstreamnt
atggccgcgacagcgggtggcggtccgggagcagcagcaggcgccgtgggtgcagggggt
gcggcggcggcctccgggctggccgtgtaccggaggaaggacgggggcccggccagcaag
ttttgggagagcccggacacggtgtcccagctagattcggtgcgagtctggctgggcaag
cactacaagaagtatgttcatgcagatgctcctaccaataaaacactagctggactggtg
gtgcagcttctacagttccaagaagatgcctttgggaagcatgtcaccaacccagctttc
accaaactacctgcaaaatgtttcatggatttcaaagctggaggcaccttgtgtcacatt
cttggggcagcttacaagtacaaaaatgaacagggctggcggagatttgatcttcagaac
ccatcccgaatggatcgtaacgttgaaatgttcatgaacattgagaaaacattggtacag
aacaactgtctgactagaccaaacatctacctcattccagacattgatttgaagttggct
aacaagttgaaagatatcatcaaacggcatcaggggacatttactgatgagaagtcaaaa
gcttcccaccatatttatccatatccttcctcacaagaggatgaggagtggctgagacca
gtgatgaggagagacaagcaggtgctggtgcactggggtttctacccagacagctatgac
acttgggtccacagtaatgatgttgatgctgaaattgaagatgcaccaatcccagaaaag
ccctggaaggttcatgtaaaatggattttggacactgacgttttcaatgaatggatgaat
gaagaggattatgaagtggatgagaacagaaagccagtgagctttcgtcaacgaatttca
acaaagaatgaagagccagtcagaagtccagaaaggagagacagaaaagcctctgccaac
tctaggaagaggaaaccttccccttctcctcctcctcccacagccacagagtcccgcaag
aagagcgggaagaaaggacaagctagcctttatgggaaacgtagaagtcagaaggaagaa
gatgagcaagaagatcttaccaaggacatggaagaccccacacctgtacctaacatagag
gaagtggttctccctaagaatgtaaacccaaagaaggacagtgaaaacacacccgttaaa
ggaggcacggtggcagatctagatgagcaggatgaagaagcagttacaacaggaggaaag
gaagatgaagatcccagcaaaggtgatccaagtcgctcagttgacccaggtgaagacaac
gtgacagaacagaccaatcacatcattattcccagctacgcatcctggtttgattataat
tgtattcatgtcattgaacggcgtgcgcttcctgagttctttaatggaaaaaacaaatcc
aagacccctgaaatatacttggcatatcgaaattttatgattgacacataccgtctaaac
cctcaagaatatttaaccagcactgcttgccggcgaaacctgactggagatgtgtgtgct
gtgatgagggttcatgccttcttagagcagtggggtcttgttaactaccaagttgaccca
gagagtcgacccatggcaatgggacctcctcccactcctcacttcaatgtgttagctgac
acaccctctgggcttgtgcccctgcatcttcgatcacctcaggtccctgccgctcaacag
atgttaaattttcctgagaagaacaaggaaaaaccaattgatttgcagaactttggtctt
cgaactgacatttactccaagaaaacactggcaaagagtaaaggtgctagtgctggaagg
gagtggacagaacaggagacccttcttctcctagaggctctggagatgtacaaggacgat
tggaataaagtgtcagaacatgttggaagccgtactcaggacgaatgcatcctccacttt
ctgaggcttcccattgaggacccttaccttgaaaattcagatgcttctcttgggccactg
gcttaccagcctgtccctttcagccagtcgggaaacccggtgatgagcactgttgccttt
ttagcatctgtcgttgacccccgtgtagcatctgctgcagcaaaagcagcgttggaggag
ttttctcgtgtccgagaagaagtacccctggaattggttgaagcacatgtcaagaaagta
caggaagctgcaagagcctctgggaaggtggaccccacctatggcttggagagcagctgt
attgctggcacagggcctgacgagccagagaagcttgaaggatctgaagaagagaagatg
gaaacagatcctgatggtcagcagcctgaaaaggcagaaaacaaagtggaaaatgaatcg
gatgaaggtgataaaatacaagatcgagagaatgaaaaaaacactgagaaggaacaagat
agtgacgtcagtgaggatgtcaagccagaagaaaaggagaatgaagagaacaaagagctc
actgatacatgtaaagaaagagaaagcgatgccgggaagaagaaagtggaacacgagatt
tcggaaggaaacgttgccacagccgcagcagctgctctggcctcagctgctactaaagcc
aagcacctggcggctgttgaagaaagaaaaatcaagtccttggtagctctcttggttgaa
acacaaatgaagaaactagagatcaaacttcgacattttgaagagctggagactataatg
gacagagagaaagaggctctagaacaacagagacagcagttgcttactgagcgtcagaac
ttccacatggaacagttgaaatatgctgaactacgtgcccggcagcaaatggagcagcag
cagcagcatggccagacacctcagcaggcgcaccagcacacgggagggccggggatggcc
ccacttggagccacaggccaccctggcatgatgccgcatcagcagccccctccctaccca
ctgatgcaccatcagatgccgccaccccatcctccccaaccaggtcaaataccaggccct
ggctccatgatgcctggccagcccatgccaggtcgcatgatccccgctgtggcagccaac
attcaccctactgggagtggccctacccctcctggtatgcctccaatgcccggaaacatc
ttaggaccccgggtacccctcacagcaccaaacggcatgtatcctcctccaccacagcag
cagcagccgcctcctcctgcagatggggtccctccacctcctgctccaggcccacccgcc
tcggccactccctag

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