KEGG   Mus musculus (house mouse): 20971
Entry
20971             CDS       T01002                                 
Symbol
Sdc4, S4, Synd4, ryudocan, syndecan-4
Name
(RefSeq) syndecan 4
  KO
K16338  syndecan 4
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04512  ECM-receptor interaction
mmu04514  Cell adhesion molecules
mmu04820  Cytoskeleton in muscle cells
mmu05205  Proteoglycans in cancer
mmu05418  Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    20971 (Sdc4)
   04514 Cell adhesion molecules
    20971 (Sdc4)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    20971 (Sdc4)
 09160 Human Diseases
  09161 Cancer: overview
   05205 Proteoglycans in cancer
    20971 (Sdc4)
  09166 Cardiovascular disease
   05418 Fluid shear stress and atherosclerosis
    20971 (Sdc4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:mmu00535]
    20971 (Sdc4)
Proteoglycans [BR:mmu00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   20971 (Sdc4)
SSDB
Motif
Pfam: Syndecan Glycophorin_A
Other DBs
NCBI-GeneID: 20971
NCBI-ProteinID: NP_035651
MGI: 1349164
Ensembl: ENSMUSG00000017009
UniProt: O35988 Q3U5S6
Position
2:complement(164266167..164285512)
AA seq 198 aa
MAPACLLAPLLLLLLGGFPLVPGESIRETEVIDPQDLLEGRYFSGALPDDEDAGGSDDFE
LSGSGDLDDTEEPRPFPEVIEPLVPLDNHIPENAQPGIRVPSEPKELEENEVIPKRAPSD
VGDDMSNKVSMSSTAQGSNIFERTEVLAALIVGGVVGILFAVFLILLLVYRMKKKDEGSY
DLGKKPIYKKAPTNEFYA
NT seq 597 nt   +upstreamnt  +downstreamnt
atggcgcctgcctgcctgcttgcgccgctgctgctgctgctcctcggaggcttccccttg
gtccccggagagtcgattcgagagacagaggtcatcgacccccaggacctcctggaaggc
agatacttctctggagccctccccgacgacgaagatgctggcggctcggatgactttgag
ctctcgggttctggagatctggatgacacggaggagcccaggcccttccctgaagtgatt
gagcccttggtgccactggataaccacatccctgagaatgcacagcctggcatccgtgtc
ccctcagagcccaaggaactggaagagaatgaggtcattcctaaaagggccccctccgac
gtgggggatgacatgtccaacaaagtatccatgtccagcactgcccagggcagcaacatc
tttgagagaactgaggtcttggcagctctgatcgtgggcggcgtggtaggcatcctcttt
gccgttttcctgatcctgctgctggtgtaccgcatgaagaagaaggacgaaggcagttac
gacttgggcaagaaacccatctacaaaaaagcccccaccaatgagttctacgcatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (22)   
   RefSeq(nuc) (2)   
   GenBank (10)   
   EMBL (10)   
Protein domain (2)   
   Pfam (2)   
All databases (46)   

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