KEGG   Mus musculus (house mouse): 212728
Entry
212728            CDS       T01002                                 
Symbol
Tarbp1, Gm17296, Gm179
Name
(RefSeq) TAR RNA binding protein 1
  KO
K15333  tRNA guanosine-2'-O-methyltransferase [EC:2.1.1.34]
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mmu03016]
    212728 (Tarbp1)
   03036 Chromosome and associated proteins [BR:mmu03036]
    212728 (Tarbp1)
Enzymes [BR:mmu01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.34  tRNA (guanosine18-2'-O)-methyltransferase
     212728 (Tarbp1)
Transfer RNA biogenesis [BR:mmu03016]
 Eukaryotic type
  tRNA modification factors
   Methyltransferases
    212728 (Tarbp1)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    212728 (Tarbp1)
SSDB
Motif
Pfam: SpoU_methylase
Other DBs
NCBI-GeneID: 212728
NCBI-ProteinID: NP_001153379
MGI: 4936930
Ensembl: ENSMUSG00000090290
UniProt: E9Q368
Position
8:complement(127152053..127201837)
AA seq 1579 aa
MERVLADALLTQSREPGELLGALCGGEASAERAETLRLVLQRLEERGAGAGALAKAAHEV
ARDHLVPLLHASQGGGPARPRVLRAASAALRSCARLAGPELAVTLAEEALRELPSAPAVE
LLAAVAPCLRAPEDAPLLRRLGRASVELALAGDAPPAVGARLLPALAQSAEPALRAAWDA
LSSAGPGAEGSTGPELLVLSALAEKLLTNHERHGDLDARLCGRFWRTVQAGLGRAQDGLT
RKRARYLLQRAVQVSAELAVDCSCSPQDTKGPSLFWWSEKRKDELLKFWENYILIMEILE
GNQIHVIKPALPKLNRLFECAVSEENGCWLFHPSWHTCIYKRMFESENKILAKEGVIHFL
ELYDVKSLPYSPELSEFITGPLMDALSESCLYSRSPGQPLGSDSPLGLKLQKFLVTYTSL
LPEETKSCFLLKLIQRMADRHWCAVPVLFLSRALASIPSCKALGGEGLLALRDVLQRTMI
THQVLLRGAAQCYLLQTAMRLVDVEKVSLSDISAFLLSLRQEESLGRGTVLWTELCDWLR
VNERYFKQSSLGGSDGQEASLNAYVKNLVQEFVKSPGWEKESSFMPDWLDARLTALMVLL
AVDVEGLKTKFREKQRTQNVLRIFLDPLLDALGKLGTNAYMPLLRTDRCLQLLVRLLHSC
VPRRPGAQDDEVSTALQGSIMSASESVSQFVLRRLTMNELQDVADLDRCQLYLTVLSELM
SLQVKLGWKAGNPISRVLSPLKNACVRHLQEAEDRQEPTLSHQVQRVVSMAALAALCEAV
DQYPVLQPDSPNAEPVDRFLSALPLNHVLQKPRSEEQSIGVCPLENGSVFEESLSSKGWG
KVVAQYLHDQWVCLSFLLRKHHHLIPSTESDVLEGFLPTAETPVQALQAALDVLTVLPAG
RILPVFRCMEVLVPKLLTSEETLCIESFDVAWKIISSLSNTQLTFWPNLKAFVHFVFDHE
ILTIAAKLKGQVYFKIKEIMCKMIEMSSIKSGVFNILIRHCCQSWLVAASGVSQGSFSSA
KDYSELVLEACVFGTVFRRDQRLIQDVQTFIENLGQGCAANVIIENAKREDYYVRICAIK
FLCLLDGSDVSHKLFLEALAIKLLDKDESASRSRTRYHENSLQHRVKNRVWQTLLVLFPA
FDQNFLHGIIDKVFHAGFTNNQASIKYFIEWLIILILHKFPEFLPKFWACFSYGEEKIKA
SICTFLSVLSHLDIIVQNIPEKKLVLKQALTVALQWCLSHNFSVRLYALVALKKAWHLCK
TLQFEECGAWTAVIECSLSQAESMHGAGNARKNWQRIQDHFFFSTFHPLKDYCLETIFYT
LPRLSGVTGEEWIALDKFANFTDIPSNAGSQWYLSGTALGELSPGDWSQQDQGSTLGEAD
SQSEWADVQKKIIPWGQSALESDLELEFQDRAAKLGKSISRLIVVASLIDKPTNLGGLCR
TCEVFGAAVLVVGSLQCVSDRQFQHLSVSAEQWLPLVEVRPSQLMNYLQQKKAEGYTVIG
VEQTAQSSDLAQYRFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGA
LLIWEYTRQQLLGCAEPPS
NT seq 4740 nt   +upstreamnt  +downstreamnt
atggagcgggtgttggcggacgcgcttctaacgcagagtcgggagcccggcgagttgctg
ggcgcgctgtgcggcggggaggcgagtgcggagcgggcggagaccctgcgcctggtgctg
cagcggctggaggagcgcggcgcgggcgccggcgcgctggccaaggcggcacacgaggtg
gccagggaccacctggtgcccttactgcacgcgtcccagggcggagggcctgcgaggccc
cgcgtgctccgagcggcgagtgcggcgctgcgctcgtgcgcgcgcctggcaggaccggag
ctggcagtcactctggccgaagaagcgctgcgcgagctgccgagcgcgccagccgtggag
ctgctggccgccgtggcgccgtgtttacgcgcgccggaggatgccccgctgctgcgtcgc
ctggggcgcgcgtctgtggagctggcgctggccggggacgcgccgccggccgtgggagcg
cgcctgctgcccgcgctggcacagagcgcagaaccggctctgcgtgcggcgtgggacgcg
ctgagctccgcgggaccgggagctgagggcagcactgggccagaactgctggtgctgagc
gcactggccgagaagctgctgaccaaccatgagcgccacggggatctcgacgcccgtctc
tgcggccgcttctggagaaccgtccaggcggggctgggccgcgcgcaggacgggctcacg
cgaaagcgcgcgcgctacctgctgcagagggctgtacaggtgtctgcagagctggcggtg
gactgctcctgcagcccccaggacacaaaaggtccgagcctattctggtggtctgagaag
agaaaagatgagctcctaaagttttgggaaaactatatcttgatcatggaaattttggaa
ggaaaccagatacatgtcataaagccagccttaccaaagctaaacaggctgtttgaatgc
gcagtgtcagaggagaatggctgctggctcttccatccctcctggcacacgtgcatctac
aaaagaatgtttgaaagcgagaataaaattctggccaaagaaggcgtgatccacttcttg
gagctgtatgacgtgaaatcgcttccttattccccggaactctcagagtttattactggc
ccgctgatggatgccctctcagagagctgtctgtacagcaggtccccagggcagccgttg
ggaagtgactctcccctgggattaaagctgcagaagtttctagtcacttatacttccctt
cttccagaagaaacaaagagttgtttcctgttaaagctcattcagagaatggcggacaga
cactggtgtgcagtgccggttttgttcctgtccagggctttggcaagcatacccagctgt
aaggccctgggtggagaaggtcttcttgccctcagggatgttctccagcgcaccatgatc
acacaccaggtcctcctgagaggagcagctcagtgctaccttcttcagacagccatgcgt
ctggtggacgtggagaaagtatctctttctgacatctcagcttttctcttgtctctgaga
caagaggagtccctcggacgtgggacggtgctgtggacagagctctgtgactggctacgt
gtcaatgaaagatactttaagcaatcctcacttggtggctctgatggacaggaggcgtca
ttaaatgcttacgtgaagaacctagttcaggagttcgtgaagtctcctggttgggaaaaa
gaaagcagcttcatgccagactggctggacgccaggctgacagcgctgatggtcctgctg
gctgtggacgtggaaggactgaagaccaagttcagggaaaagcagaggactcagaacgtg
ttgaggatcttcctagaccccttgctggatgccctagggaagctcggcaccaatgcctac
atgcccttgctgaggactgaccggtgcctccagctgctggtgaggttgctgcattcttgt
gtgccaagacgtcccggtgcccaggatgatgaggtatccactgccctccagggctccatc
atgtctgcttcagagagcgtgtctcagtttgtgctcaggagactcaccatgaacgagctg
caggatgtggcggatctggaccgatgtcagctctacctgacggtgttgtctgagctcatg
agtctccaggttaagctgggctggaaagcaggcaaccccatcagccgggtcctttctcct
ttgaaaaacgcatgtgttcgccatctgcaggaggctgaggacagacaggagccgaccttg
agtcatcaggtacagagagtggtcagcatggccgccctggcagctctgtgtgaggctgtg
gaccagtacccagtgctgcagcctgactcccccaatgctgagcctgtggacaggttcctg
tcagctcttccactcaatcacgtgctgcagaagccccgatcagaggagcagagcatcggt
gtgtgtcccctggagaatggcagtgtctttgaagaatcattgtcttccaaaggatggggg
aaagtagttgcacagtatctacatgatcagtgggtctgcctctccttcctgctgagaaag
caccaccacctcattccaagcacggaaagtgacgtgctggagggctttctccctactgct
gagacacctgtgcaggccctgcaggcagcgctggacgtcctcaccgtcctccctgctggc
cgcatcttgcctgtgttccgctgcatggaggtgctagttcccaagctcctgacctccgag
gagaccctctgcatagagtcctttgacgtggcttggaaaattatatcttccttgagcaac
acacagctgacgttctggcctaatttaaaggcttttgttcactttgttttcgaccatgag
attcttaccattgctgcaaaactcaagggccaggtgtacttcaaaataaaagagattatg
tgcaagatgattgaaatgtcctccataaaatcaggtgtcttcaatattctgatacgtcac
tgctgccagtcatggctagtggctgcttccggcgtgtcccaggggtcattctccagtgct
aaggattacagtgaacttgtcctggaggcttgcgtgtttggaacagtgtttaggcgcgat
cagagacttattcaggatgtccaaaccttcatagaaaaccttggacaaggctgtgcagca
aacgtcatcattgagaatgctaagagagaagattattacgtgagaatctgtgccatcaaa
ttcttgtgtctgctagatggctccgatgtgtcccacaagttgttcttagaagctcttgcc
atcaagctcttggataaggatgagtcagcatccaggtccagaactcgataccatgagaac
tccctccagcaccgggtgaagaaccgtgtgtggcagactctgcttgtcctcttccctgca
tttgatcagaacttcttacatggaattattgataaggtctttcacgctggcttcaccaac
aatcaagcgtccataaaatattttattgagtggcttattatattgattcttcataaattc
cctgagtttcttccaaagttctgggcgtgtttttcttacggtgaagaaaaaattaaggca
agcatttgtacatttttatctgttttatcacatttggacatcattgttcagaatattcca
gaaaagaagctggttctgaagcaagctctcaccgttgccctccagtggtgtctgagtcac
aatttcagtgttcggctctatgctctggtagccctcaagaaggcctggcatctgtgtaaa
acactgcagtttgaggagtgtggcgcctggaccgcagtcatcgagtgcagcctcagccaa
gcagaaagcatgcacggagcagggaatgccaggaagaactggcagcgcatccaggaccat
ttcttcttctccaccttccacccccttaaggactactgtctggagaccatattttacacg
ctcccacggctctcgggtgtcactggagaggagtggatcgccttggataaatttgccaac
ttcacagacatcccttccaatgcagggtcccagtggtacctgtctgggactgcactcggt
gagctgagtccaggagactggtcccagcaggaccaaggttctactttgggtgaagcagac
agccagtcagaatgggctgatgtccagaaaaaaatcatcccatggggacaaagcgctctg
gaatcagacctggagctcgagtttcaggatcgggctgccaagctcggaaagtccattagc
agactgatcgttgtggcctcactcatcgacaagccgaccaacctgggagggctgtgcagg
acctgtgaggtgttcggggctgcagtacttgttgtcggcagccttcagtgtgtcagcgat
agacagttccagcacctcagtgtgtctgcagagcagtggcttcctctggtggaggtgaga
ccatcccagctgatgaattatctgcagcagaaaaaggcagaaggctacactgtcattggc
gtggagcagacagcgcaaagctcagatctggcccagtaccgcttccctgagaagtcgctg
ctgctgttgggaaacgagcgggaaggaatcccagccaacctgatccagcagctggatgtg
tgtgtggagattcctcagcagggcatcatccgctcactaaatgtgcatgtgagcggggct
ctgctgatttgggagtacaccagacagcagctgctcgggtgtgcggagccaccatcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (62)   

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