KEGG   Mus musculus (house mouse): 213988
Entry
213988            CDS       T01002                                 
Symbol
Tnrc6b, 2700090M07Rik, A730065C02Rik, D230019K20Rik
Name
(RefSeq) trinucleotide repeat containing 6b
  KO
K18412  trinucleotide repeat-containing gene 6 protein
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    213988 (Tnrc6b)
   03036 Chromosome and associated proteins [BR:mmu03036]
    213988 (Tnrc6b)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     213988 (Tnrc6b)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    213988 (Tnrc6b)
SSDB
Motif
Pfam: TNRC6-PABC_bdg Ago_hook RRM_occluded RRM_1
Other DBs
NCBI-GeneID: 213988
NCBI-ProteinID: NP_659061
MGI: 2443730
Ensembl: ENSMUSG00000047888
UniProt: Q8BKI2 Q8VD67 Q8BX83 Q8BWL0
Position
15:80595514..80825287
AA seq 1810 aa
MQTNEGEVEEESSSQVEQEDFVMEGHGKTPPPGEESKQEKEQEREEQLMEDKKRKKEDKK
KKEATQKVTEQKTKVPEVTKPSLSQPTAASPIGSSPSPPVNGGNNAKRVAVPNGQPPSAA
RYMPREVPPRFRCQQDHKVLLKRGQPPPPSCMLLGGGAGPPPCTAPGANPNNNAQVTGAL
LQSESGTAPESTLGGAAASNYANSTWGPGASSNSGASPNPIHIWDKVIVDGSDMEEWPCI
ASKDTESSSENTTDNNSASNPGSEKSSLPGSTTSNKGKGSQCQAASSGNECNLGVWKSDP
KAKSVQPPNSTSDSNNGLGNWRSTSGQDRIGPGSGFSNFNPNSNPSAWPALVQEGTSRKG
ALETESSSSSAQVSTVGQASREQQSKMENAGVNFVVSGREQAQIHNTDGPKNGNTNSLNL
SSPNPMENKGMPFGMGLGNTSRSTDAPSQSTGDRKTGSVGSWGAARGPSGTDTVSGQSNS
GNNGNNGKDREDSWKGASVPKPTGSKSDSWDNNNRSTGGSWNFGPQDNNDNKWGEGNKMT
SGVSQGEWKQPTGSDELKIGEWSGPNQPNSSTGAWDNQKGHPLPENQGNAQAPCWGRSSS
SAGSEVGGQSTGSNHKAGSSDSHNSGRRSYRPTHPDCQAVLQTLLSRTDLDPRVLSNTGW
GQTQIKQDTVWDIEEVPRPEGKSDKGTEGWESAATQTKNSGGWGDAPSQSNQMKSGWGEL
SASTEWKDPKSTGGWNDYKNNNSSNWGGGRADEKTPSSWNESSCKDQGWGGGRQPNQGWT
SGKNGWGEEVDQVKNNNWESSANKPVSGWGEGGQNEIGTWGNGGNTNLASKGGWEDCKRS
PAWNETGRQPNSWNKQHQQQQQPPPPQPEASGSWGGPPPPPQGNVRPSNSNWSSGPQPTT
PKDDEPSGWEEPSPQSISRKMDIDDGTSAWGDPNSYNYKNVNLWDKNSQGGPAPREPNLP
TPMTGKSASVWSKSTPPAPDNGTSAWGEPNESSPGWGEMDDAGASTTGWGNTPANAPNAM
KPNSKSMQDGWGESDGPVTGARHPSWEEEDDGGVWNTAGSQGSTSSHNSASWGQGGKKQM
KCSLKGGNNDSWMNPLAKQFSNMGLLSQTEDNPSSKMDLSVDKKFDVDKRTMNLGDFNDI
MRKDRPGFRPPNSKDLGTTDSGPYFEKGGSHGLFGNSTAQSRGLHTPVQPLSSSPGLRAQ
VPPQFISPQVSASMLKQFPNSGLNPGLFNVGPQLSPQQIAMLSQLPQIPQFQLACQLLLQ
QQQQQQQLLQNQRKISQAVRQQQEQQLARMVSALQQQQQQQQQQQRQPSMKHSPSHPVGP
KPHLDNMVPNALNVGLPDLPTKGPIPGYGSGFSSGGMDYGMVGGKEAGTESRFKQWTSMM
EGLPSVATQEATMHKNGAIVAPGKTRGGSPYNQFDIIPGDTLGGHTGPAGDSWLPAKSPP
TNKIGSKSSNASWPPEFQPGVPWKGIQNIDPESDPYVTPGSVLGGTTTSPIVDTDHQLLR
DNTTGSNSSLNTSLPSPGAWPYSASDNSFTNVHSTSAKFPDYKSTWSPDPIGHNPTHLSN
KMWKNHISSRNTTPLTRPPPGLTNPKPASPWSSTAPRSVRGWGTQDSRIASASTWSDGGS
VRPSYWLVLHNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEAAKAQTAL
HMCVLGNTTILAEFATEDEVSRFLAQAQPPTPAATPSAPATGWQSLETSQNQADPVGPAL
NLFGGSTGLGQWSSSAGGSSGADLAGTSLWGPPNYSSSLWGVPTVEDPHRMGSPAPLLPG
DLLGGGSDSI
NT seq 5433 nt   +upstreamnt  +downstreamnt
atgcaaaccaatgagggagaagtagaggaagaaagcagctcccaggtggaacaggaggat
tttgtaatggaagggcatggcaagactccacctcctggagaagaaagcaaacaagagaag
gagcaagaaagggaagaacagttaatggaagacaagaaaaggaagaaagaggataaaaag
aaaaaagaagccacccagaaggtcacggaacaaaaaaccaaagtgcccgaagtgacgaaa
ccaagtttaagccaaccaacggccgccagcccaattggcagctctccatcgccaccagtc
aatggtggcaacaatgccaaaagggtggcagtgccgaacggacaaccgccaagcgccgcc
cgctacatgcctcgggaggtgccaccgcgattccgttgccagcaggaccataaagtgtta
ctaaaacgtgggcagccccctccaccgtcctgcatgctcctcgggggtggggcggggcct
cctccctgcacagcacctggagcaaaccccaacaacaacgcacaagtgacaggagcgctg
ctgcagagtgagagtgggactgcaccagagtcaacccttggaggtgctgctgcttcaaat
tatgcaaattccacttggggcccgggagcctcctccaacagcggcgcctcccccaaccca
attcacatctgggacaaggtgattgtagacgggtctgacatggaagagtggccttgtatt
gccagcaaagacactgaatcttcttccgaaaacaccaccgataacaacagtgcctcgaac
cctggctctgagaagagcagtctgccaggaagcaccactagtaacaaaggcaaagggagc
caatgccaggctgcaagttctgggaacgaatgtaatcttggggtctggaaatctgacccc
aaggctaagtctgttcaacctcccaactctacttcagatagcaacaatggactaggaaac
tggaggagcacgagtggtcaggatagaattggacctggctctggcttcagcaactttaac
ccaaatagcaacccatctgcctggccagcattggtccaagaagggacttctagaaaaggg
gcattggaaacagaaagtagtagttccagtgcacaagttagcacagtaggtcaggcatcc
agggaacagcagtcaaagatggaaaatgcgggtgttaattttgttgtctctggcagagaa
caggctcaaattcataacactgatggaccaaaaaatggaaacactaactccttgaactta
agttcaccaaaccccatggaaaataagggaatgccctttggaatgggcttggggaacacc
tccaggagcactgatgccccttcacaaagcactggagatcgaaagactgggagtgttggg
tcttggggtgcagctagggggccttctggaactgacacagtctctggacaaagcaattct
ggaaataatgggaacaatggaaaagacagagaggactcctggaaaggagcttctgttcca
aaaccaactgggtcaaaaagtgactcttgggacaacaataacaggtctacgggtgggtcc
tggaactttggccctcaggacaataatgacaacaaatggggtgaagggaacaaaatgaca
tctggggtctctcagggagaatggaaacagccgactgggtctgatgagttgaaaattgga
gaatggagtggtccaaaccaaccaaattctagcactggagcatgggacaatcaaaagggc
caccccctccctgaaaaccaaggcaatgcccaggctccctgttggggaagatcttccagc
tccgcaggaagtgaagttggaggtcaaagcactggaagcaaccacaaagcaggaagtagt
gacagtcataattctggtcgtcggtcatataggcccacgcatcctgattgccaggctgtc
ttgcagactcttttgagccggactgatttggaccctagggtgctctcaaacactggctgg
ggccaaactcaaattaagcaggacacagtgtgggatattgaagaggtgccaaggcctgag
gggaaatctgacaaaggaactgaggggtgggagagcgctgccacacagaccaagaactca
gggggctggggagatgcacccagccaaagcaatcaaatgaagtctggatggggggagctc
tcagcctcgacagagtggaaagaccccaagagcacaggaggctggaatgactataagaac
aacaactcttctaactggggaggaggccgagcagatgaaaagacaccttcctcttggaat
gagagttcttgtaaggatcaggggtggggaggtgggcgccaacccaaccaaggatggact
tctgggaagaatggttggggcgaggaggtggatcaagtgaaaaataataattgggaaagt
tctgccaataagcctgtgtctgggtggggtgaaggaggacagaatgaaattggaacttgg
ggtaatggtgggaatacaaacctagcatcaaaaggtgggtgggaagattgcaaaagatcc
cctgcatggaatgagacaggcagacagcccaattcctggaataaacaacaccaacagcag
cagcagccaccgccaccacagccagaggcttctggttcatggggaggcccacccccgcca
cctcaaggcaatgttcgaccttctaattccaactggagcagtggaccccagcctacaacc
cctaaggatgatgaacccagtggttgggaggagccatccccacagtcaattagtcggaaa
atggacattgatgatggcacttcagcttggggagaccctaacagttataactacaagaat
gtgaacctttgggataagaattctcaagggggcccagcacctcgagaaccaaacctgcct
accccaatgaccgggaaatcagcatcagtctggagcaaaagcacaccacctgctccagat
aatgggacttcagcctggggtgagccaaatgaaagcagtcctgggtggggtgaaatggat
gatgcaggagcatcaaccacaggctggggaaacacacctgccaacgctcccaatgccatg
aaacccaattccaaatctatgcaagacggctggggggagagtgacggaccagtcacagga
gctcgccatcctagctgggaagaggaggatgacggaggagtctggaacaccgccggctct
cagggaagcacttcctcccacaactcagcaagctggggacaaggaggaaagaaacaaatg
aagtgctcactaaaaggaggaaacaatgattcatggatgaatcctcttgccaaacagttt
tcaaatatgggattgctgagtcaaactgaggataacccaagcagcaaaatggatttgtct
gtagataagaaatttgatgtggacaagagaacaatgaatctcggggattttaatgatatc
atgaggaaggatcgacctgggttccgtccacctaattccaaagacttgggaaccacagac
agtgggccttattttgagaagggcggcagtcatggtttgtttggaaacagcacagcacaa
tcgagaggcctgcacactccagtgcagccactaagttcttctcctggtctccgggcgcaa
gtgcctccccagtttatctccccccaggtttctgcctcaatgctcaagcagttccccaac
agtggcctgaatccaggtctctttaatgtggggccccagctatctcctcaacagattgcc
atgctgagccagcttccacagataccccagtttcagttggcatgtcagcttctcctgcag
cagcagcagcaacagcagcagttgctacagaaccagagaaagatttctcaagcagtgcgc
cagcagcaagaacagcagctggcaagaatggtgagtgctctccagcagcagcaacagcag
cagcagcagcagcagaggcagcctagcatgaagcattcaccttctcatcctgttgggcct
aagccacatttggacaacatggtacccaatgcgctgaatgtggggctcccagaccttcca
accaaagggccaattcctggatatggttctggcttcagctctggtggcatggactatggt
atggttggtggcaaggaggctgggaccgagtctcgcttcaaacagtggacctcaatgatg
gaagggctgccatctgtggccacacaagaagccaccatgcacaaaaacggcgctatagtg
gcccctggtaagacccgaggaggttcaccatacaaccagtttgatataatcccaggtgac
acactgggtggccatacgggtcctgctggtgatagctggttacctgccaaatctccaccg
actaataaaatcggaagtaaatccagcaatgccagttggcctccagaattccaaccagga
gtgccatggaaaggtatccaaaatattgaccctgaatctgacccctatgtcaccccagga
agtgtgctagggggtacaaccacatctcccattgtagatactgaccaccaactgctgcgg
gataacaccacagggtctaattcctccctcaacacctcgctgccttcacctggtgcctgg
ccctacagtgcctctgacaactcctttaccaacgttcatagcacttcagcaaagttccct
gattataaatccacgtggtccccagatcccataggacacaaccccactcatctctccaat
aagatgtggaaaaatcacatctcctccaggaacactacaccgctgacccgcccacctcct
ggcctgaccaaccccaaaccggcatctccttggagcagcacagcaccgcgatcggtcagg
gggtgggggacacaggactcccggattgcctcggcctctacctggagtgatggtggctct
gtccgtcctagttactggctggttctccacaatctcaccccacagattgatgggtcaacc
ctgagaacgatctgcatgcagcatggcccactgctgacattccatctgaacctaacccag
ggcactgccctgatccgatacagcaccaaacaagaggcagccaaggcccagactgcactg
cacatgtgtgtgttgggaaacactaccatcctggccgagtttgccactgaggatgaagtc
agccgctttctggctcaagctcagccccctacgcctgcagccaccccgagtgcacctgcc
acagggtggcagtccctggagaccagccagaaccaagcagaccccgttggacctgcgctg
aaccttttcggtgggtccaccgggctcgggcagtggagcagcagcgctggtggcagcagt
ggggccgatcttgccggcacttccttgtggggccccccaaactattcttctagcttgtgg
ggagtcccgacggtggaagatccccataggatgggcagccctgctcctttactacctggt
gaccttctgggaggagggtcggattcaatctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (46)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (4)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (50)   
   RefSeq(nuc) (2)   
   GenBank (24)   
   EMBL (24)   
Protein domain (4)   
   Pfam (4)   
All databases (111)   

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