KEGG   Mus musculus (house mouse): 21681
Entry
21681             CDS       T01002                                 
Symbol
Alyref, Aly, Ref1, Ref1-I, Refbp1, Tho4, Thoc4
Name
(RefSeq) Aly/REF export factor
  KO
K12881  THO complex subunit 4
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03013  Nucleocytoplasmic transport
mmu03015  mRNA surveillance pathway
mmu03040  Spliceosome
mmu05014  Amyotrophic lateral sclerosis
mmu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    21681 (Alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    21681 (Alyref)
   03015 mRNA surveillance pathway
    21681 (Alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    21681 (Alyref)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    21681 (Alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    21681 (Alyref)
   03041 Spliceosome [BR:mmu03041]
    21681 (Alyref)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     21681 (Alyref)
    TREX complex
     21681 (Alyref)
Spliceosome [BR:mmu03041]
 Complex C
  Other components
   EJC/TREX
    21681 (Alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    21681 (Alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded
Other DBs
NCBI-GeneID: 21681
NCBI-ProteinID: NP_035698
MGI: 1341044
Ensembl: ENSMUSG00000025134
UniProt: O08583
Structure
Position
11:complement(120485330..120489342)
AA seq 255 aa
MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGGGPMRNRPA
IARGAAGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDAD
IQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV
TSQIDTQRRPAQSINRGGMTRNRGSGGFGGGGTRRGTRGGSRGRGRGTGRNSKQQLSAEE
LDAQLDAYNARMDTS
NT seq 768 nt   +upstreamnt  +downstreamnt
atggccgacaaaatggacatgtctttggacgacatcattaagctgaaccggagccagcga
ggaggccgcggcgggggccggggtcgcggcagggccggctcccagggcggccgcggcggc
gcagtgcaggccgccgcgcgggtgaatcgaggcggcgggcctatgaggaaccggcccgcc
atcgcccgcggcgccgcaggcggcggcaggaaccggccggcgccgtacagcagaccgaaa
caacttcccgacaaatggcagcacgacctcttcgacagcggcttcgggggtggagccggc
gtggagaccggcgggaagctgctggtgtccaacctggacttcggagtgtcagatgctgat
attcaggaactctttgctgaatttgggacattgaaaaaagctgctgtgcactatgatcgc
tctggacgaagtttagggacagcagatgtgcactttgaacggaaagcagatgccctgaag
gctatgaaacagtacaatggtgtccctttggatggccgccctatgaacatccagcttgtc
acatcacagattgatacacagcgaagacctgcacagagcataaacagaggcggcatgaca
agaaaccgtggctctggaggttttggtggtggtggcaccaggagagggacacgtggaggc
agccggggaagaggtagaggcaccggcaggaactcaaagcagcagctttctgcagaggag
ttggacgcacagctggatgcttacaatgcaaggatggacaccagctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (12)   
   RefSeq(nuc) (2)   
   GenBank (5)   
   EMBL (5)   
3D Structure (1)   
   PDB (1)   
Protein domain (3)   
   Pfam (3)   
All databases (50)   

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