KEGG   Mus musculus (house mouse): 224705
Entry
224705            CDS       T01002                                 
Symbol
Vps52, ARE1, D130068D18, D430041K17Rik, SAC2, Sacm2l, tclw5
Name
(RefSeq) VPS52 GARP complex subunit
  KO
K20298  vacuolar protein sorting-associated protein 52
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mmu04131]
    224705 (Vps52)
Membrane trafficking [BR:mmu04131]
 Protein recycling
  Others
   EARP complex
    224705 (Vps52)
 Endosome - Golgi transport
  Tethering complex
   GARP complex
    224705 (Vps52)
SSDB
Motif
Pfam: Vps52_C Vps52_CC Sec3_CC Dor1 Sec3_C-term COG6_N ATG16 COG2
Other DBs
NCBI-GeneID: 224705
NCBI-ProteinID: NP_766208
MGI: 1330304
Ensembl: ENSMUSG00000024319
UniProt: Q8C754
Position
17:34174753..34186012
AA seq 723 aa
MAAAATMAAAARELVLRAGASDVEEEEGPLGGGSGLQEPLQLGELDITSDEFILDEVDVH
IQANLEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACD
AVLERMEQMLGAFQSDLSSISSEIRTLQEQSGAMNIRLRNRQAVRGKLGELVDGLVVPSA
LVTAILEAPVTEPRFLEQLQELDAKAAAVREQEAMGTAACADVRGVLDRLRVKAVTKIRE
FILQKIYSFRKPMTNYQIPQAALLKYRFFYQFLLGNERATAKEIRDEYVETLSKIYLSYY
RSYVGRLMKVQYEEVAEKDDLMGVEDTAKKGFFSKPSLRSRNTIFTLGTRGTVISPAELE
APILVPHTAQRGEQRYPFEALFRSQHYALLDNSCREYLFICEFFIVSGPAAHDLFHAVMG
RTLSMTLKHLESYLADCYDAIAVFLCIHIVLRFRNIAAKRDVPALDRYWEQVLALLWPRF
ELILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTLQLLGQLQ
VEVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEF
IEELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKASVESLSQDV
MRSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARAELINIHHLMVELKKHK
PNF
NT seq 2172 nt   +upstreamnt  +downstreamnt
atggcagccgcagcgaccatggcggccgctgcccgggagctggtgttgcgggctggggcc
tcagatgtagaggaggaggagggcccgctgggggggggttctggactccaagaaccccta
caacttggagagttggacatcacctctgatgaattcatcttggatgaagtggatgttcac
atccaggcaaacctggaggatgagttagtgaaggaagctctcaaaacgggtgtggatctt
cgacactattcaaagcaggtggagctggagctgcagcagattgagcagaagtcaatccgg
gactatatccaagagagtgaaaacatagcgtctctgcacaatcagatcacggcctgtgac
gccgtcctggagcgcatggaacagatgctgggagcttttcagagcgatctcagctccatc
agctctgagatccgaaccctgcaggagcagtcgggggccatgaacatccgacttcgtaac
cgacaggcagttcgggggaaacttggggaacttgtggatgggctggtggtgccctctgct
ctggtcacagcaattctggaagctccagtgaccgagcccaggttcctggagcagctacag
gagctggatgccaaggcagccgcggtgagagagcaggaggctatgggcaccgctgcctgt
gctgacgtcagaggcgtgctggaccggctccgggtcaaggcagtgacgaagatccgggag
tttattctccagaagatctactccttcagaaagcccatgaccaactaccagatcccccag
gcggccctgctgaagtacaggtttttctatcagttcctgctgggtaatgagcgtgctaca
gccaaggagatcagggatgagtacgtagagacgctgagcaagatctacctgtcctactac
cgatcctatgtggggcggctcatgaaagtgcagtacgaggaagttgctgagaaagacgac
ctaatgggtgttgaagacacagcaaagaaaggcttcttctcgaagccgtccctccgaagc
aggaacaccatctttacccttggcactcgtggtactgtcatctcaccggccgagctggag
gcccccatcctagtgccccatactgcccaacgtggagagcagaggtatccattcgaagcg
ctcttccgcagccagcactatgccctcctcgacaattcttgccgtgaatatcttttcatc
tgtgaatttttcatcgtgtctggcccggctgcacatgacctgttccacgccgtcatgggc
cgcacgctctccatgacgctgaaacacctggagtcctacctggctgactgctacgatgcc
attgctgtttttctctgtatccacattgttctccggttccgcaacattgcagcgaagagg
gacgtccctgccctggacaggtactgggagcaggtgcttgccttgctgtggcctcggttt
gagctgatcctggagatgaatgtccagagtgtccgcagcactgacccccagcgccttggg
ggactggacactcggccccactatatcacacgccgctatgctgagttctcctctgcactt
gtcagcatcaaccagacgatccccaatgaacgcacgctgcagctcctgggacagctccag
gtggaggtggagaattttgtcctccgagtggctgcagagttctcctccaggaaggagcag
cttgtgtttctgatcaacaactatgacatgatgctcggggtgctgatggagcgggctgct
gatgacagcaaagaggtggaaagtttccagcagctgctcaatgctcggacacaggagttc
attgaggagctgctgtctccccccttcgggggtctggtggcattcgtgaaggaggctgaa
gccttgattgagcgtgggcaggctgagcggctccgaggggaggaagcccgagtcactcag
ctgatccgtggctttggtagttcctggaaggcatcagtggagtccctgagtcaggatgta
atgcgaagttttaccaacttccgaaatggaaccagcatcatccagggggcgctgacccag
ctgatccagctctaccatcgcttccaccgggtgctgtctcagccccagctccgcgcactc
ccggccagggccgagctcatcaacatccatcacctcatggtggagctgaagaaacacaag
ccgaacttctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (8)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (6)   
DNA sequence (100)   
   RefSeq(nuc) (8)   
   GenBank (46)   
   EMBL (46)   
Protein domain (8)   
   Pfam (8)   
All databases (132)   

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