KEGG   Mus musculus (house mouse): 225929
Entry
225929            CDS       T01002                                 
Symbol
Patl1, Pat1b
Name
(RefSeq) protein associated with topoisomerase II homolog 1 (yeast)
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    225929 (Patl1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    225929 (Patl1)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     225929 (Patl1)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     225929 (Patl1)
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 225929
NCBI-ProteinID: NP_766223
MGI: 2147679
Ensembl: ENSMUSG00000046139
UniProt: Q3TC46
Position
19:11889728..11922462
AA seq 770 aa
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVAADEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPLQGPEDDRDLSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERISPNQLCSV
PNSSLLGHPFPPNVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQMLPPAPSFRAFFSAPPPATPPPQQHPPGPGPHLQNLRPQAPMFRADTTHLHPQ
HRRLLHQRQLQSRNQHRNLNGTGDRGGHQSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYQPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPALMDERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMATARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQLM
NLPQSASAPAPSNSHLTAVLQNKFGLSLLLILLSRGEDLQSSDPAIESTQNNQWTEVMFM
ATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq 2313 nt   +upstreamnt  +downstreamnt
atgttccgctacgagtctttggaggattgtcctctagatgaagatgaagatgcatttcaa
ggcctgggagaagaagatgaagaaattgatcaatttaatgatgatacctttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcgcctggctgagttggaagagaagcta
cctgtggcagctgatgaacaaacaggcaatggagagagagatgagatggatttgttgggt
gaccatgaggagaatctagcagaaaggctcagtaagatggtgattgaaaatgagctagaa
gatccagctatcatgagggcagtacagaccaggccagttttacaacctcaaccaggaagt
ctgaattccagcatctgggatggatctgaagttctgaggcgaatccgtggaccactactt
gctcaggaaatgcctacagtgtctgtattagagtatgccttgcctcagaggcccctgcag
ggcccagaagatgatcgggacctttctgagcgagctttaccaaggcggtcaacatcacct
atcattggaagtcctcctgttagagccgttcctataggcaccccacctaagcagatggct
gttcccagcttcaaccaacagatcctgtgtccgaagcctgttcatgttcggcccccaatg
ccgccacgctatcctgctccctatggcgagaggatatctccaaaccagctctgcagtgtc
ccgaactcctccctcctgggccacccttttcctcctaatgttcctcctgtacttagtccc
ctgcagagagcacagcttcttgggggagcacagctacagcctggacgaatgtctcccagc
cagtttgcacgggtccctgggtttgttggtagcccactggctgccatgaatcctaagttg
ctacaagggcgcgttgggcagatgcttcccccagcaccaagcttccgtgccttctttagt
gctccaccccccgctacgccacctccacagcagcatccccctggcccaggacctcaccta
caaaacctcagacctcaggccccaatgtttagagcagacacaactcaccttcatccacag
caccggcgcctgttgcatcagaggcagctgcagagcagaaatcagcatcggaatctcaat
ggtactggagatagaggagggcaccagtccagtcatcaagatcatctccggaaggatcca
tatgctaatctaatgttgcagcgggagaaggattgggtctctaaaatacagatgatgcag
ctgcagagcactgatccctacctggatgatttctattaccagaattactttgaaaaactg
gagaaattgtcagctgctgaggaaatacaaggtgatggccctaagaaggagcgtaccaag
ctcatcacccctcaggtggccaaactggagcatgcttatcagcctgtgcagtttgagggc
tcgttggggaagcttactgtctctagtgtgaataatcctcggaagatgatagatgctgtt
gtgacatctcgaagtgaggatgatgaaacaaaagaaaaacaagttcgggataagagaaga
aaaacccttgttataattgagaaaacctatagtttactccttgatgtggaggattatgaa
aggcgctatctcctaagtctagaagaagagcggcctgccctgatggatgaaagaaagcac
aaaatatgtagcatgtatgacaacctgaggggcaaattgcctggacaagagaggccaagt
gatgaccactttgtacagatcatgtgtatccgaaaagggaagagaatggttgcccgcatt
ctccctttcctctccacagagcaagcagctgacattctcatggcaactgccaggaacctc
cctttccttatcaagaaggatgcccaagatgaggtgctgccatgcttactgagtcccttc
tctctcctcctctatcatcttccttcagtgactgtcaccagccttctgcaacagctaatg
aacctacctcagagtgcaagtgcaccagcgccctccaactctcacctcactgctgtgctc
cagaacaagtttggcttgtcactgctcctaatcctactaagccgtggagaagacctacag
agttcagatcctgctatagaatcaacgcaaaataaccagtggacagaggtgatgttcatg
gcaacccgagaacttctacggatcccccaagctgccctggccaaaccaatctctatccct
acaaatctagtgtcccttttttctcgctatgttgaccggcagaaactgaacttgctggaa
acaaaactgcagctggttcaggggatacggtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (29)   
   RefSeq(nuc) (5)   
   GenBank (12)   
   EMBL (12)   
Protein domain (1)   
   Pfam (1)   
All databases (64)   

Download RDF
DBGET integrated database retrieval system