KEGG   Mus musculus (house mouse): 226517
Entry
226517            CDS       T01002                                 
Symbol
Smg7, 9430023P16Rik, mKIAA0250
Name
(RefSeq) SMG7 nonsense mediated mRNA decay factor
  KO
K14409  protein SMG7
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    226517 (Smg7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    226517 (Smg7)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     226517 (Smg7)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     226517 (Smg7)
SSDB
Motif
Pfam: EST1_DNA_bind EST1 TPR_17 TPR_2 TPR_7
Other DBs
NCBI-GeneID: 226517
NCBI-ProteinID: NP_001153728
MGI: 2682334
Ensembl: ENSMUSG00000042772
UniProt: Q5RJH6
Position
1:complement(152712746..152783212)
AA seq 1138 aa
MSLQSAQYLRQAEVLKAEMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHSSTIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEL
KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVI
NLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFMSFLGILCKCPLQNDSQESNNAYPL
PAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLISLLNSFHPREDDLSNTNATPLPEEFEL
QGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLIQCENEVG
KLLFITEIPELILEDPSEAKENLILQETSVVESLATDGSPGLKSVLSTGRNPSNSCDSGE
KPVVTFKENIKPREVNQGRSFPPKEVKSQTELRKTPVSEARKTPVTQTPSQTSNSQFIPI
HHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQSTAHSPAGNQVQ
AGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQPPLTSLPAQPTAQSTSQLQVQALAQQQQ
SPTKVIPALGKSPPHHSGFQQYQQADASKQLWNPPQVQSPLGKIMPVKQSYYLQTQDPIK
LFEPSLQPPVIQQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWDSSYSMADNRAVMAQQPN
MDRRSKRSPGVFRPEQDPVPRMPFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYP
ALLGPLASLPGRSLFKSLLEKPSELMSHSSSFLSLTGFSVNQERYPNSSMFNEVYGKNLT
TSSKAELNPSVASQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTH
NHNSAPFSNFGPIGTPDNRDRRPADRWKTDKPAMGGFGVDYLSATSSSESSWHQASTPSG
TWTGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGAMNPPH
NT seq 3417 nt   +upstreamnt  +downstreamnt
atgagcctgcagagcgcgcagtatctccggcaggcagaagtcctgaaggctgaaatgaca
gattctaagctgggtccggctgaggtctggacatccaggcaagctctgcaggacttgtac
cagaaaatgctagttactgatctggaatacgctttagacaagaaagtagaacaggatctc
tggaatcatgcctttaagaatcagatcacaacactgcaaggccaagccaagaatcgagca
aacccaaatcgaagtgaagtccaggcaaacctttctctgttcctagaggcagctagcggc
ttctatactcagttattacaggaactgtgtacggtgtttaatgtagatttgccatgccgt
gtgaagtcttcccagttgggaattattagcaataaacagacgcacagcagcaccatagtg
aagccacagtctagctcctgctcctacatttgccaacactgcctcgtccaccttggagac
attgctcgatacagaaatcagactagccaggcagagtcctactataggcatgcagctcag
cttgtcccctccaatggtcagccttacaatcagttggctatcttagcttcttccaaagga
gaccacctgaccacaattttctactactgcagaagcattgctgtgaaattccctttccca
gctgcctccactaatctacaaaaagcactttctaaagcactggaaagccgggatgagttg
aaaaccaagtggggtgtttctgacttcatcaaggcctttattaaattccacggtcatgta
tacctgagtaagagtttggaaaagctgagccctcttcgagagaagttggaagaacagttt
aagagactgctgttccaaaaggctttcaactctcaacagttagttcatgtcactgtcatt
aacctgtttcaacttcatcatcttcgtgactttagcaatgaaacagagcaacacagttac
agccaagatgaacagctgtgttggacacagttgctggccctctttatgtcttttctcggc
atcctgtgcaaatgtcctctccagaatgattctcaggagtccaacaatgcctaccccctt
cctgcagtcaaggtctccatggactggctaagactccgacctagagtctttcaagaagca
gtggtggatgaaagacagtacatttggccctggctaatttctcttctaaatagtttccat
ccccgtgaagatgatctctcaaatactaatgccacaccacttccagaggagtttgaatta
caaggattcttggctttaagaccttctttcaggaacttggatttttccaaaggccatcag
ggtattacaggagacaaagagggtcaacaacgacgaatacgacagcagcgtttgatctcc
atagggaaatggattgctgataaccagccacggctgattcagtgtgaaaatgaggtaggg
aaattgttatttatcacagaaatcccagaattaatactagaagaccccagtgaagccaaa
gagaacctcatcctacaagaaacatctgtggtagagtcactggctacggatgggagccca
ggactgaaatcagtgctgtctacaggccgaaatccaagcaacagctgtgactcaggagag
aaaccagtggtcacctttaaagagaacattaagccacgagaagtgaaccaaggaagaagc
tttcctcccaaagaggtaaaatcccagacagaactaagaaagactccagtgtctgaagcc
aggaaaacgcctgtcactcaaactccaagtcaaacgagtaattctcagttcatccccatc
catcaccctggagccttccctcctcttcccagccgaccaggattcccgcccccaacatat
gttatcccccctcctgtggcattttctatgggctcaggttacaccttcccagctggtgtt
tctgtcccaggaacctttcttcagtctacagctcactctccagcaggaaaccaggtgcaa
gctgggaaacagtcccacattccttacagccagcaacggccctctggaccagggccaatg
aaccagggacctcaacagtcacagccaccttcccagccaccccttacatctttaccagct
cagccaacagcacagtctacaagccaattgcaggttcaagctctagctcagcaacagcaa
tcccctacaaaagtcataccagctttggggaaaagcccgcctcaccactctggattccag
cagtatcaacaggcagatgcctccaaacagctgtggaatccccctcaggttcaaagccca
ctagggaaaattatgcctgtgaaacagtcctactaccttcagacccaagaccctataaaa
ctgtttgagccgtcattgcaacctcctgtaatacagcagcagcctctagagaaaaaaatg
aagcctttccccatggagccatataaccataatccctcagaagtcaaggtcccagagttc
tactgggattcttcctacagcatggccgataacagagcagtaatggctcagcaaccaaat
atggaccgcaggagcaaacggtcacctggagtcttccgtccagaacaggatcctgtgccc
aggatgccatttgaggaccccaagagctcccctctgcttcctccggacctgttaaagagt
ctggctgccttggaggaagaggaagagctgatcttttctaaccctcctgatctttaccca
gctctgctgggtcctctcgcctctcttcctggacgaagcctctttaaatccttattggag
aagccttctgagctcatgtcacattcatcttctttcctgtccctcacggggttctctgtc
aatcaggaaagatatccaaacagcagtatgttcaatgaagtgtatggaaaaaacctgaca
accagctccaaggcagaactgaacccctcagtcgcctcccaggaaacatcactgtactcc
ctttttgaagggaccccatggtctccatcacttcctgccagttcagatcattcgacacca
gccagccagtctcctcattcctctaacccaagcagcctgcccagttctcctccaacgcat
aaccataattctgctccattctctaattttggacccattgggactccagataacagggat
aggcggcctgcagataggtggaaaactgataaaccagccatgggtggttttggtgttgat
tatctctcagcaacgtcatcatctgagagcagttggcatcaggctagcactccgagtggc
acctggacaggccacggcccctccatggaggattcctctgctgtcctcatggaaagccta
aagtctatctggtccagttccatgatgcatcctgggccctccgctctggagcagttgtta
atgcagcagaagcagaaacagcagcggggacaaggtgccatgaaccctccacactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (16)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (14)   
DNA sequence (26)   
   RefSeq(nuc) (14)   
   GenBank (6)   
   EMBL (6)   
Protein domain (5)   
   Pfam (5)   
All databases (68)   

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