KEGG   Mus musculus (house mouse): 227334
Entry
227334            CDS       T01002                                 
Symbol
Usp40, B230215L03Rik, C730029K03
Name
(RefSeq) ubiquitin specific peptidase 40
  KO
K11869  ubiquitin carboxyl-terminal hydrolase 40 [EC:3.4.19.12]
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:mmu01002]
    227334 (Usp40)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mmu04121]
    227334 (Usp40)
Enzymes [BR:mmu01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     227334 (Usp40)
Peptidases and inhibitors [BR:mmu01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   227334 (Usp40)
Ubiquitin system [BR:mmu04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    227334 (Usp40)
SSDB
Motif
Pfam: UCH UCH_1 DUF6084 DUF5772
Other DBs
NCBI-GeneID: 227334
NCBI-ProteinID: NP_001185502
MGI: 2443184
Ensembl: ENSMUSG00000005501
UniProt: Q8BWR4
Position
1:complement(87872841..87936308)
AA seq 1235 aa
MFGNLFEEDYSSVSSSQYGRGKKLKTKGLEPPAPREFTNLSGIRNQGGTCYLSSLLQTLH
FTPEFREALFSLGPEELGSLEDKDKPDAKVRIIPLQLQRLFAQLLLLDQEAASTIDLTDS
FGWTNDEEMRQHDVQELNRILFSALETSLVGTSGHDLIHRLYHGTIVNQIVCKECKNISE
RQEDFLDLTVAVKNVSGLEDELCNMYVEEEIFDYDNLYHCGTCDRLVKAAKSAKLRKLPP
FLTISLLRFNFDFVKCERYKDTSCYTFPLRINLKPFCEQSELDDMEYMYDLFSVIIHKGG
CYGGHYHVYIKDVDHLGNWQCQEEISDTNVNVKAPQSEEEANDPLVVLKTILLQEEANQI
PVDQLGQKLLKKTGISWNKKYRKQHGPLRKFLQLHPQIFLLSTDESTVSLLRNHLTQAPS
DLQSCEQILHTLASESPGLNDDTSCPHWFDINDSKVHPIREKDITQQFQGKESAYMLFYR
KATLQRPPEARANPRYRVPCHLLKEMDAANILLQMRRAECDSANSTFELHLHLGPHYRFF
NGALHPAVSETESVWDLTFDKRKTLGDLRQSIFQLLECWEGDMVLSVAKRVPAGLHVYHT
LDGDDLTLCEAEVADGEDIFVWNGVEVGGVQIQTGFDCEPLLLNILHLELSGEGSKCEQL
VESPHVFPANAEVGAVFTALGTPAGAILMNSVESADGECWTAVPKEDMKKTFREQGLRNG
SLILVQDSDSDNNSLLPKQGRWTNSMNELNWLQVKNFCQSESEEKQVQIAVTMHTVVFDI
RIKAIKELKLMKELAENSCLRPIDRNGKLLCPVPDSSTLEEAEVKMGSSVGLCLGKAPTS
SQLFLFFALGTDIHPGAEMDIIVEETLSVRDCLKIMLEKSGQQGEIWHLRKMDWCYEAGE
PLCEEDATLKELMIRSGDTLLLTEGKLPPPGHLKMPIWWYQPARLSGHCESRDHLNCAFS
QDSTWRAAPTQGAPGPEPAEVSLLYLGDMEISEEATLVELKSQALALPSVSKLAVQSTAL
LRVWTVESKRPSRLLRTNWRQLKEYRLGRRAELCLELLQKEEDLGPRDVLLRTQLRIPGE
RAYSLATDLIWDTTRGWTAGSLRQRVADFYSLPVEKIEIAKYFPEKFEWLPISSWNQQVA
KRKKKKNQDTLQGGPYYLKDGDTIGIKNLLFDDNDDFSTIRDDIGKENQKRLALEKKKSR
EVHRAQSSDLFSNAGVPARFRGPEASLSIHVASFR
NT seq 3708 nt   +upstreamnt  +downstreamnt
atgtttgggaacctatttgaagaggattattccagtgtgtcaagtagtcagtatggaaga
gggaagaaattaaagactaaaggtttggagccgcctgcccctagagaattcaccaattta
agtggaatcagaaatcagggtggaacctgttacctcagctcccttcttcagacgcttcat
ttcacacctgaattcagagaagctttattttctcttggtccggaagagctgggttcttta
gaggataaagataaacctgatgcaaaggttcggatcatacctttgcagttgcagcgcttg
tttgcccagcttctgctcttggaccaggaggctgcatctaccatagacctcaccgacagc
ttcgggtggaccaacgatgaggaaatgaggcaacatgatgtgcaggaactcaaccgaatt
ctcttcagtgctttggaaacttctttagttgggacctctggccatgacctcattcatcgt
ctataccatggcaccattgtgaaccagattgtttgcaaagagtgtaagaacatcagtgag
aggcaggaagacttcttggatttgacagtagcagtcaaaaatgtatctggtttagaagat
gaactctgcaacatgtatgtggaggaagaaatttttgactatgacaacctgtaccactgt
ggaacctgtgaccgactggttaaagcagcaaagtctgccaaattgcgtaagctgcctcct
tttcttactatttcattactaagatttaattttgattttgtgaaatgtgaacgctacaag
gatactagctgttatacattccccctccggatcaatctcaagcctttctgtgaacagagt
gaactggatgacatggaatatatgtatgacctcttctccgtcattatccacaaaggtggc
tgctatggaggtcattaccatgtgtacattaaagatgttgatcatcttggcaactggcaa
tgtcaagaggagataagtgatacaaatgtgaatgtgaaagctcctcagagtgaagaagag
gctaatgatccattggtggttctaaaaacaatcttattgcaggaggaggccaatcaaatt
cctgttgatcaactgggccagaaactcttgaaaaaaacaggaatatcttggaacaagaag
tacaggaaacagcatggaccactgcgaaagttcttacagctccatcctcagatatttctg
ctcagcacagatgaaagtacagttagtctcctgaggaaccatcttacccaggccccatct
gacctacagagctgtgaacagattctacatacacttgcttcagaatccccaggcttgaat
gatgacaccagttgcccacactggtttgatatcaatgattccaaagtccatccaatcaga
gagaaagatatcacacagcagttccagggtaaagaaagtgcctacatgctgttttatcgg
aaagccacgttacaaaggccccctgaagctcgagccaatccaagatacagagttccatgt
cacttgctgaaggaaatggatgcagccaacattctactgcagatgagaagggcagaatgt
gactctgcaaacagtacttttgagttgcatcttcatttgggtcctcactaccgtttcttc
aatggggctcttcaccctgcagtctctgagacagaaagcgtgtgggacttaacgtttgat
aaaagaaaaactttaggagatctccgtcagtcaatatttcagctattggaatgttgggaa
ggagacatggttcttagtgttgcgaagcgtgtgccagcaggacttcatgtgtaccacacc
ctcgatggagatgacttgacactgtgtgaagctgaggttgctgatggggaagacatcttt
gtatggaatggggtagaggttggtggagtccaaattcagactggttttgattgtgaacct
ctgctgttaaacattcttcatctagaactaagtggtgaaggctcaaaatgtgagcagttg
gtggagtcaccacatgtctttcctgctaatgcagaagtgggcgctgtgttcacagccttg
ggcaccccagcaggtgccatcctcatgaacagtgtggagtctgcagatggagagtgctgg
actgctgttcccaaagaagacatgaagaagacgttcagagaacaaggtctcagaaatgga
agcttaattttggttcaagattcagacagtgataataacagtctgttgcccaaacaaggg
agatggaccaacagcatgaatgagctcaactggctccaagtgaaaaatttctgccagtca
gaatctgaagagaagcaggttcagatagccgtgaccatgcacacagtggtgtttgatatt
cgaattaaagccataaaggaattaaaattaatgaaggaactagctgagaacagctgtttg
agacccattgatagaaacgggaagcttctttgtccagtcccagacagtagcactttggag
gaagcagaggtgaagatggggagctccgtgggcctgtgtctgggaaaagcaccaacttcc
tctcagctgttcctgttttttgctctggggactgacattcaccctggggcagagatggac
atcatagtagaagaaacactctcagtgagagattgtttaaagataatgctggagaagtca
ggtcagcaaggagagatttggcacttaaggaaaatggattggtgctatgaagctggtgaa
cctttatgtgaagaggatgcaacactgaaagagcttatgatacgttctggggatactttg
cttttaactgaagggaaacttcctcctccgggtcacttgaagatgcccatctggtggtac
cagcctgcaaggctgtcaggacactgtgagagtcgggaccacttaaactgtgccttttct
caagatagcacctggagggctgctcccacccaaggtgctcctggccccgagcctgcagaa
gtctctctcctctacttgggggatatggagatctcagaagaggccacattggtggaactg
aagtctcaggccttggccttgccttctgtttcgaagctcgctgtccagtccacagccctg
ctcagagtctggacagtggagagcaagcgccccagcagactcttgcgcactaactggcgg
cagctcaaggagtacagactgggccggagagcagagctctgcctagagctccttcaaaaa
gaggaggacttggggccccgagatgtactgctgaggacacagctacgcatccctggtgag
agagcctactccctggcgacagacctgatatgggacaccaccagaggatggactgctggc
tccttgaggcagagagtagctgacttctattctcttcctgtggagaaaattgaaattgcc
aaatattttcctgaaaagtttgagtggcttccaatatctagctggaatcagcaagttgcc
aaaagaaaaaagaagaaaaaccaagatactttgcaagggggaccatattacttgaaagat
ggagacactattggcattaagaatctcctgtttgatgacaatgatgatttcagcacaatc
agagatgacattggaaaggagaaccagaagcggctagctttggaaaaaaagaaaagccga
gaagtccaccgtgcacagagcagcgatttgttctccaatgcaggggtgcccgctaggttc
cggggaccagaagcttctctgtccatccacgttgcaagcttcagatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (9)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (7)   
DNA sequence (39)   
   RefSeq(nuc) (15)   
   GenBank (12)   
   EMBL (12)   
Protein domain (4)   
   Pfam (4)   
All databases (77)   

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