KEGG   Mus musculus (house mouse): 228545
Entry
228545            CDS       T01002                                 
Symbol
Vps18, 9930024E13Rik
Name
(RefSeq) VPS18 CORVET/HOPS core subunit
  KO
K20181  vacuolar protein sorting-associated protein 18
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04140  Autophagy - animal
mmu04148  Efferocytosis
mmu05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    228545 (Vps18)
   04148 Efferocytosis
    228545 (Vps18)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    228545 (Vps18)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mmu04131]
    228545 (Vps18)
Membrane trafficking [BR:mmu04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    228545 (Vps18)
   Hops complex
    228545 (Vps18)
SSDB
Motif
Pfam: Pep3_Vps18 Clathrin zf-RING_5 Vps39_2 zf-RING_16 zf-C3HC4_2 KNOX2 zf-RING_2 zf-ANAPC11 zf-RING_UBOX zf-rbx1 zf-C3HC4
Other DBs
NCBI-GeneID: 228545
NCBI-ProteinID: NP_758473
MGI: 2443626
Ensembl: ENSMUSG00000034216
UniProt: Q8R307
Position
2:119119220..119128934
AA seq 973 aa
MASILDEYEDSLSRSAVLQTGCPSVGIPHSGYVSAHLEKEVPIFTKQRVDFTPSERITSL
VVSCNQLCMSLGKDTLLRIDLGKASEPNRVELGRKDDAKVHKMFLDHTGSHLLVALSSTE
VLYMNRNGQKARPLARWKGQLVESVGWNKAMGNESSTGPILVGTAQGQIFEAELSASEGG
LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRGFVIATTRQRLFQFIGRAVEDTE
AQGFAGLFAAYTDHPPPFREFPSNLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGSLDCG
RPDSLLSEERVWEYPAGVGPGANPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
EKFGPLRHMVKDSSTGHLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREADFCFRQHRYLESARCYALTQSYFEEIALKFLEARQEEALAEFLQRKLAGL
KPTERTQATLLTTWLTELYLSRLGALQGDPDALTLYRDTRECFRTFLSSPRHKEWLFASR
ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSP
ILIRHIPRQLVDAWIEMGSRLDARQLIPALVNYSQGGEAQQVSQAIRYMEFCVNVLGETE
QAIHNYLLSLYARGQPASLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL
ELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQEL
RGRYGTVEPQDKCSTCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQR
KLGAAPPPTKGSVKAKEAEAGAAAVGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI
DPQRYEEEHLSWL
NT seq 2922 nt   +upstreamnt  +downstreamnt
atggcgtccatcctggatgagtacgaggactcattgtcccgctcggccgtcttgcagact
ggttgccctagcgtgggcatcccccattctgggtatgtaagtgcccacctggagaaggag
gtgcccatcttcaccaagcagcgggttgacttcaccccctcggagcggatcactagcctc
gtggtctcctgcaatcagctctgcatgagcctgggcaaggatacactgctccgcattgac
ttgggcaaggcaagtgagcccaaccgtgtggaactggggcgcaaggacgacgccaaagtc
cacaagatgttcctggaccatactggctctcatctgctggttgcgctgagtagcaccgag
gtcctttacatgaaccgcaatggacagaaggcccggcccctggctcgctggaagggacag
ctggtggagagtgtgggatggaacaaggccatgggcaacgagagcagcaccggccccatc
ctggtcggcacagctcaaggacagatctttgaagcagagctctcagctagcgagggtggc
ctctttggccctgccccagatctctacttccgtccactgtatgtgttaaatgaagaaggg
ggtccagcccctgtgtgctccctcgaggctgagcgtggccccgatggccgaggctttgtc
attgccaccactcggcagcgcctcttccagttcataggccgagctgtggaagatactgaa
gcccagggcttcgcaggactctttgctgcctatacagaccacccgcccccattccgtgag
tttcctagcaatttggggtatagtgagttggctttctatacccctaagttacgctcggca
cctcgcgcctttgcctggatgatgggagatggagtgctgtatggctcactggactgcggg
cgtcctgactcgctgctgagtgaggagcgagtgtgggaatacccagcgggggttggtcct
ggggccaatccacccttagccatcgtcctgacccagttccatttcctactgctgctggcc
gaccgggtggaggctgtgtgcacgctaacagggcaggtggtgctacgggatcacttcctg
gagaagtttggaccactgaggcacatggtgaaggactcatccacaggccacctatgggcc
tacactgagcgtgcggtcttccgctaccatgtgcaacgtgaggcacgggatgtctggcgc
acctacttggacatgaaccgctttgacctggccaaagagtattgtagagagcggcctgat
tgcctggacacggtcctggcccgagaggctgatttctgttttcgtcagcatcgctacctg
gagagcgcccgctgctacgcgctgacccagagctattttgaggagattgccctcaagttc
ttggaggcccggcaagaggaggcgctggccgagtttcttcagcggaaactggccggcttg
aagccgacggagcgtacccaggccacactgctgaccacttggctgacagagctctacctg
agccgcctgggtgctctgcagggtgacccagatgctctgactctctaccgggacacacgg
gagtgtttccgtacttttctcagtagccctcggcacaaagagtggctctttgccagccgg
gcctctatccacgagctgctcgccagtcacggagacacagagcacatggtgtattttgca
gtgatcatgcaggactatgaacgggtggtcgcataccactgccagcatgaggcttacgag
gaggccctggctgtgcttgcccgccaccgggacccccagctcttctacaaattctccccc
attctcatccgccacatcccccgccagctcgtagacgcctggattgagatgggcagccgg
ctggatgctcggcagctcatccctgccctggtgaactacagccagggcggtgaggcccag
caggtgagccaggccatccgctacatggaattctgcgtgaatgtgctcggtgagacggag
caggccattcacaactacctgctgtccctgtatgcccgtggccagccagcctcacttctg
gcatacctggaacaagctggggccagcccgcaccgtgtacattatgatctcaaatatgca
cttcgactttgtgctgagcacggccaccaccgcgcctgcgtccatgtctataaggtgttg
gagctatatgaggaggctgtggacctggccctgcaggtggatgtggacctggccaagcag
tgtgcagacttgccggaggaggatgaggaacttcgcaagaaactatggctcaagatcgcc
cggcacgtggtgcaggaggaagaagacgtccagacagccatggcctgcttggccagctgc
cccttgctcaagatcgaggatgtgctgcccttcttccctgactttgtcaccatcgaccac
ttcaaggaggcaatctgtagttccctgaaggcctacaaccaccacatccaggagctgcag
cgcgagatggaagaagccacagccagtgcccagcgcatccgacgagacttgcaggagctc
cgaggccgctatggcaccgtggagccccaggacaaatgctccacctgtgactttcctttg
ctcaaccgacccttttacctgtttctctgtggccacatgtttcacgctgactgtctccta
caggctgtgcggcccggcctccctgcctacaagcaggccagacttgaggaactgcagcgc
aagcttggggcggcgcctcctccgaccaaaggctccgtgaaggccaaggaggcagaagct
ggggctgcagcggtggggcccagtcgggagcagctcaaggctgacctggatgagctggtg
gctgctgagtgtgtgtactgtggggagctgatgattcggtctatcgaccggcccttcatt
gatccgcagcgctatgaggaggagcacctcagctggctatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (48)   
   RefSeq(nuc) (2)   
   GenBank (23)   
   EMBL (23)   
Protein domain (12)   
   Pfam (12)   
All databases (88)   

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