KEGG   Mus musculus (house mouse): 231386
Entry
231386            CDS       T01002                                 
Symbol
Ythdc1, A730098D12Rik, mKIAA1966
Name
(RefSeq) YTH domain containing 1
  KO
K20100  YTH domain-containing protein 1
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mmu03041]
    231386 (Ythdc1)
Spliceosome [BR:mmu03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA binding proteins (RBPs)
    231386 (Ythdc1)
SSDB
Motif
Pfam: YTH
Other DBs
NCBI-GeneID: 231386
NCBI-ProteinID: NP_808348
MGI: 2443713
Ensembl: ENSMUSG00000035851
UniProt: E9Q5K9 Q8C4W4
Position
5:86951349..86984518
AA seq 736 aa
MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSERMESTDTKRQ
KPSIHSRQLISKPLSSSVSNNKRIVSTKGKSVTEYKNEEYQRSERNKRLDADRKIRLSSS
SSREPYKSQPEKTCLRKRDSERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEDYG
SDHETGSSGSSEQGNNTENEEEGGEEDVEEDEEVDEDAEDDEEVDEDAEEEEEEDEEEEE
DEDEDEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKK
ERKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFL
IKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSES
HHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQE
IELECGTQLCLLFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPED
YDIHNSRKKPRIDYPPEFHQRPGYVKDPRYQEVDSFTNLIPNRRFSGVRRDVFLNGSYND
YVREFHNMGPPPPWQGMPPYPGIEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDK
RVHDYDMRVDDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERER
ICDRDRDRGERGRYRR
NT seq 2211 nt   +upstreamnt  +downstreamnt
atggcggccgacagccgggaggagaaagatggggaacttaatgttttggatgatattttg
actgaagtaccagaacaggatgatgaattgtataatccagagagtgaacaagataaaaat
gagaaaaaaggatcaaaaagaaaaagtgagagaatggagtctactgacaccaagcgacaa
aaaccttccatccattcaagacaattgatttctaagccactaagctcatctgtaagcaat
aataaaagaatagttagtacaaaaggaaagtcggttacagaatataaaaatgaggaatat
caaagatctgaaaggaacaagcgtctagatgctgatcgaaaaattcgtctgtcaagcagt
tcctctagagaaccttacaagagtcaaccagaaaaaacttgtctacggaaaagggattct
gaaagaagggccaagtctcctacaccagatggttctgagagaattgggcttgaagttgat
agacgtgcaagcagatccagccagtcttcaaaggaagaggtgaactctgaagactatggc
tctgaccacgagacaggaagcagtggttcttctgaacagggcaacaacactgagaatgag
gaggaaggaggggaggaagatgtagaggaagatgaagaggtagatgaagatgcagaagat
gatgaggaagtggatgaagatgcagaggaggaggaggaagaggatgaagaggaagaagag
gatgaggacgaggatgaagaggaagaagaatatgaacaggatgagagagatcagaaggaa
gaagggaatgattatgacacccgaagtgaggccagtgattctggttccgagtctgtttcc
ttcacagatggatctgtcagatctgggtcaggaacagatggatcagatgagaaaaagaag
gaaaggaagagagctcgaggcatatcacccattgtctttgatagaagtggcagttctgca
tcagagtcatatgcaggttcagaaaagaagcatgagaaattatcatcttccgttcgtgct
gtccgaaaagatcaaaccagtaaactcaaatatgtccttcaggatgcaagatttttcctc
ataaagagtaataaccatgagaatgtgtctcttgccaaagcaaagggtgtatggtccaca
ttgcctgtaaatgagaagaaattaaatcttgcatttagatctgcaaggagtgttatatta
atattttctgtcagagaaagtggaaaatttcaaggttttgccagattgtcttcagaatca
caccatggcggatctcctatacactgggtgcttccagcaggaatgagtgctaaaatgctt
ggaggtgtttttaaaatagactggatttgcaggcgtgaattaccctttactaaatcagct
catctcaccaatccctggaatgaacataagccagtaaagattggacgtgatggacaggaa
attgaacttgaatgtggaactcagctttgtcttctgtttccccctgatgaaagtattgac
ttgtatcagctcattcataaaatgcgtcacaagagaagaatgcattctcagcctcgatca
agaggacgtccatcccgtcgagaaccagtccgggatgtgggaaggcgtcgaccagaagat
tatgatattcataacagcagaaagaaaccaaggattgactatccccctgagtttcaccag
agaccagggtatgtaaaggatccccgataccaggaagtggacagttttacaaatcttatt
cccaacagacgattttcaggagttcgccgagatgtgtttttaaatgggtcctacaatgat
tatgtgagggaatttcataacatgggaccaccgcctccttggcaaggaatgcctccttac
ccgggaatagaacaacctccacaccatccttactaccagcaccatgccccacctcctcaa
gcccaccccccttactcaggacaccatccggtaccacatgaagcaagatacagagataaa
cgagtacatgactatgatatgagggtcgatgatttccttcgccgcacgcaagctgtggtc
agtggtcggagaagtagacctcgagaaagagatcgggagcgagagcgagaccgccccaga
gataacagaagagatagagagcgagacagaggtcgtgatcgagaaagagagagagaaaga
atatgtgatcgggacagagaccgaggggagagaggtcgttatcgaagataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (13)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (10)   
DNA sequence (46)   
   RefSeq(nuc) (14)   
   GenBank (16)   
   EMBL (16)   
Protein domain (1)   
   Pfam (1)   
All databases (96)   

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