KEGG   Mus musculus (house mouse): 237782
Entry
237782            CDS       T01002                                 
Symbol
Smcr8, 2310076G09Rik, D030073L15Rik
Name
(RefSeq) Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)
  KO
K23611  guanine nucleotide exchange protein SMCR8
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04140  Autophagy - animal
mmu05014  Amyotrophic lateral sclerosis
mmu05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    237782 (Smcr8)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    237782 (Smcr8)
   05022 Pathways of neurodegeneration - multiple diseases
    237782 (Smcr8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mmu04131]
    237782 (Smcr8)
Membrane trafficking [BR:mmu04131]
 Autophagy
  Other autophagy associated proteins
   Rab associated proteins
    237782 (Smcr8)
SSDB
Motif
Pfam: Folliculin
Other DBs
NCBI-GeneID: 237782
NCBI-ProteinID: NP_001078909
MGI: 2444720
Ensembl: ENSMUSG00000049323
UniProt: Q3UMB5
Position
11:60668351..60679113
AA seq 935 aa
MISAPDVVAFTKEDEYEEEPYNEPALPEEYSVPLFPYASQGANPWSKLSGAKFSRDFILI
SEFSEQVGPQPLLTIPNDTKVFGTFDLNYFSLRIMSVDYQASFVGHPPGSAYPKLNFVED
SKVVLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYISADQHKIMQQFQELSAEFSKAS
ECLKMGNRKAFAGELEKKLKDLDYTRTVLHTETEIQKKANDKGFYSSQAIEKANELANVE
KSIIEHQDLLRQIRSYPRQKTKIPDLQPGDTEHTQDQADQVSTTSNPEESANADLYTCRP
AYTPKLIKAKSTKCFDKKLKTLEELCDTEYFTQTLAQLSHIEHMFRGDLCYLLTSQIDRV
LRKQQPITNFLFEDFVEVDDRMEKQENVPSQPSQDRLPPKPVEECPIPKVLISVGSYKSS
VESVLIKMEQELGDEEYTGVEATEARSFDPQENLDYLDMDMKGSISSGESIEVLGTEKSA
SVLSKSDSQASLTVPLSPHVVRSKAVSHRTISEDSIEVLSTCPSEALIPDDFKASYPSAI
NEEEAYADNEGAIHFQASAGSPEPDETQEGNLENIPSQIDSSCCIGKESEGHLVPLPTPA
YTLSDEDSVVSIPPQRYIQKDQGLHVDFGVENTDPSPRDNSCEMFPAYELDPSCLLASRD
VSKMSLDNYSDTTSYMGSAASTSSDRIPSAPPAGLSSERHKKRAGQNALKFIRQYPFAHP
AIYSLLSGRTLVVLGEDETIVRKLVTALSIFVPNYGCYAKPVKHWISSPLHIMDFQKWKL
IGLQRVASPANVGTLHTLSRYSRYTSILDLDSKTLRCPLYRGTLVPRLADHRTQIKRGST
YYLHVQSMLTQLCSKAFLYTFCHHLHLPAHSEETQEAVASRQTSFLKLNLGLVNEDIRVV
QYLAELLKLHYMQESPGTTHPLLRFDYVPSFLYKI
NT seq 2808 nt   +upstreamnt  +downstreamnt
atgatcagcgcccctgatgtggtggccttcaccaaggaagatgaatacgaggaagaacct
tacaatgagcccgctttgcctgaggagtactcagtccctctctttccttatgccagccag
ggggcaaacccctggtctaaactgtctggggccaagttctccagggacttcatcctcatt
tccgagttctctgagcaggtgggaccccagcccttgcttaccatccccaatgacaccaaa
gtttttggcacttttgatcttaattacttctctttgcggattatgtcggtggattaccag
gcttcattcgtaggccatcctcccggttctgcctaccccaagttgaactttgtggaagac
tctaaagtggtactgggagactctaaggaaggggcctttgcatatgtgcaccacctcacc
ttgtacgacctggaggccaggggctttgtgaggcccttttgtatggcttatatctccgca
gaccagcataaaatcatgcagcagttccaagagctctcggccgaattttccaaagcatct
gagtgcttgaagatgggcaacaggaaggcattcgctggggaacttgaaaaaaagctgaaa
gacttggattacacaaggacagtgctacacacagaaaccgagatccagaagaaagccaac
gacaagggtttttattcttctcaggcgattgagaaagccaatgaactggccaatgtggag
aagtccatcatcgaacatcaagatttgctgaggcagatccgctcataccctcgtcagaag
acgaagatccctgacttgcagcctggtgatacagagcatacccaggatcaggctgaccag
gtatccactacctctaatcctgaggagtccgctaatgcagacctttatacctgcagaccg
gcttacacccccaaactcatcaaagcaaagtccaccaagtgttttgacaagaagttgaag
accttggaggaactctgtgacactgagtatttcactcagaccctggcccagcttagccac
attgaacacatgttcagaggagacctgtgctacctcctgaccagtcagattgacagagtg
cttcgaaaacaacagcccataacgaatttcctctttgaagattttgtagaggtggatgac
aggatggaaaagcaagagaatgtaccctctcagcccagtcaggacaggctgcctcccaag
cctgtagaagaatgccccattcctaaagtgttaattagcgttggctcttacaagtccagt
gtggagtctgtattgatcaagatggagcaggaacttggcgatgaagagtacacgggggtg
gaggcaacagaggcacgcagttttgacccccaagagaacctggactacctggatatggat
atgaaagggagcatcagtagtggggaaagcattgaggtgctgggcaccgagaagtcagcc
tctgtgttgtcgaaatctgacagccaggccagcctcaccgtgccattgagcccccatgta
gtccgtagcaaagcggtcagccacaggacaatcagcgaggacagcattgaagtcttaagt
acctgcccttctgaggccctcattcctgatgactttaaggccagttacccaagtgccatt
aatgaagaagaagcctatgcggataatgagggggccatccatttccaggcaagtgccggc
tcaccagaaccggatgagactcaggagggcaacttggaaaatatcccatcccaaatagac
tccagctgctgtattggaaaggagagtgaaggtcacttggtgcctctcccaaccccagcc
tacactctttctgatgaggacagtgtggtgagcattcccccacagcgctacatacagaag
gaccaggggctccacgtggacttcggagtggaaaacactgacccttctccccgagacaac
agttgtgaaatgttcccagcttatgagctggatccaagctgccttctggctagccgagat
gttagtaagatgagcctggataactactcggataccactagctacatgggcagtgcggcc
tctaccagctcagacagaatcccctcagcacctcctgctggcctatcctctgagaggcac
aaaaagagagctggccagaatgccttaaaattcatccgccagtacccttttgcccaccca
gccatctactccctgctcagtgggaggacacttgtggtcctgggcgaagatgaaaccatt
gtcaggaagctggtgactgcactgtccatctttgttcccaactatggctgctatgccaag
ccggtgaagcactggatttcttcccctttgcatattatggatttccagaagtggaagctt
attggcctacaaagagtggcctctcctgccaatgtgggtaccctccataccctgagccgt
tacagccgttatacaagcatcctggacctggacagcaagaccctacgctgtcccctatac
aggggtacactggtaccccgcctggctgaccatcgcactcagatcaagcggggcagcaca
tactaccttcacgtccagagcatgctcacccagctctgctccaaggcattcctctacacc
ttttgtcaccacttgcatctgcccgcccacagtgaggagacacaagaagcagtggccagc
agacaaaccagcttcctaaagctaaacctggggctcgtgaacgaggacatcagagtggta
cagtacctggctgagctgttgaaactgcactatatgcaggagtcaccggggaccacccac
ccactgctcaggtttgactacgtccccagctttttgtacaaaatctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (22)   
   RefSeq(nuc) (2)   
   GenBank (10)   
   EMBL (10)   
Protein domain (1)   
   Pfam (1)   
All databases (48)   

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