KEGG   Mus musculus (house mouse): 240087
Entry
240087            CDS       T01002                                 
Symbol
Mdc1, 6820401C03, Nfbd1, mKIAA0170
Name
(RefSeq) mediator of DNA damage checkpoint 1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mmu03400]
    240087 (Mdc1)
DNA repair and recombination proteins [BR:mmu03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    240087 (Mdc1)
SSDB
Motif
Pfam: BRCT_2 FHA RTT107_BRCT_5 BRCT Yop-YscD_cpl
Other DBs
NCBI-GeneID: 240087
NCBI-ProteinID: NP_001010833
MGI: 3525201
Ensembl: ENSMUSG00000061607
UniProt: Q5PSV9 E9QK89
Structure
Position
17:36152390..36170562
AA seq 1708 aa
MESTQVIDWDAEEEEETELSSGSLGYSVEPIGQLRLFSGTHGPERDFPLYLGKNVVGRSP
DCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVKPPRVLPPGVSHRLRDQEL
ILFADFPCQYHRLDVPPPLVPRSLLTIEKTPRIRIESQNSRVLLAADSEEEGDFPSGRCV
ANGQRNTASPSATVVPESDEEVSSPAPSVPGPSSPFGLGSDTDEEQGQQPGVEESSLADS
SGAAGEAEQPEANGTTAGIQAQPTEHKLKDTKVKKEAGRAGVSDGSVLERSPTLGEDSDT
EVDEDHKPGFADSETDVEEERIPVTPPVAPVKKNQVLLAVGIGDPEAPGVAHLQDCLAGS
GTDVEDKTALDVPLERNHTPMVINSDTDEEEEEEEEEVSAALTLAHLKERGIGLWSRDPG
AEEVKSQPQVLVEQSQSASGRDSDTDVEEESSGRKREIIPDSPMDVDEALTVTQPESQPP
RRPNDADEYMDMSSPGSHLVVNQASFAVVGKTRAQVEEEVPGPSVILGEKHQVPLEGAQP
PEEAWETAVQEGSSSPEAAASVRPSQQPVAEDAGTECATAVSEQESTLEVRSQSGSPAAP
VEQVVIHTDTSGDPTLPQREGAQTPTGREREAHVGRTKSAKECCDAEPEDLCLPATQCFV
EGESQHPEAVQSLENEPTQLFPCTLPQEPGPSHLSLQTPGADTLDVPWEVLATQPFCLRE
QSETSELHEAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEKAMGIPKEMAD
RMTPEREPLEREIRGRTENSERDVIGEELIQGTKDREPKKVLARDSQRKEADKDLEGNRE
SLEVEIEMSKDSQKRERKVEKPEPKREWEPADLEVTPDRGVTEEGSHDQKGQIASLTLKP
GVGVKDLEGLASAPIITGSQADGGKGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPDHC
LFSSVPEASTQSLLTSQSQKQSTPQPLFSTSSSEIPLPESLHTKPNVRPRRSSRMTPSPH
SSAALKPNTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPVDPELQPSTSTEQPVIP
KLTSQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPRATRGRPSKSPNKTPEPLIST
GPELQPPTSIEQPVIPKPTSRVTRGRPRKSSVRTPESVVSTGPELQPLTSIEQPVIPEPR
ATRGRPSKSSIKTPESVVPTGPELQPLTSAKQPVTPNLTSRASRGRSSKSIRTPEPVVQT
GPEFHPSTSTEQPDTREPSSQARTRRSAVKTPEASVPTTPELQPFTSKKQPAPKPTALVT
QGRTYKPSTEDCESVGPVAPDFEPSTSTDHLVTPKVTDQSLTLQSSPLSASPVSSTPDLK
PPVPIAQPVTPEPIPQANHQRKRRAAGKQGSRTVPLGHKSYSALSEPEPQSSASQSSGAS
EADSPRQKRPRRQASQKTVVIKEEPVETEVKEEPQETAIPTPEKRKRDHAEEVTQGKPTR
SRRTKPNQETAPKVLFTGVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKFLCAL
GKGIPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARERRLLEDYEI
HVTPGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIITCTEDLPRCAIPSRLGLPLLS
PEFLLTGVLKQEATPEAFVLSNLEMSST
NT seq 5127 nt   +upstreamnt  +downstreamnt
atggaaagcacccaggtgattgactgggatgctgaagaagaggaagagacagaactatcc
agtggctccttggggtatagtgtggagcctatagggcagctacgtctcttcagtggaact
catggaccagaaagagatttccccctctaccttggcaagaatgtagttggtcgaagccct
gactgctctgtggccctgccttttccatccatctccaaacagcatgcagtaattgaaatc
tcagcttggaacaaagcccctatcctccaggattgtgggagcctcaatggcactcaaatc
gtaaagcctcctagggtcctacctcctggagtgagccatcgtctgagggaccaggaatta
attctgtttgcagattttccctgccagtaccatcgcctggatgtcccaccacccttggtc
cctcggagtcttctaactatagagaaaacccccagaatacggatagaatcccaaaattcc
agagttttgttggctgccgattcagaggaagaaggggattttccttctggaaggtgtgtg
gcgaatggacaaaggaatacagcatccccttcagcaacagtagttccagaaagtgatgaa
gaggtctcttctccggccccaagtgtccccgggccatcttcaccctttggtttgggcagt
gacactgatgaagaacaaggtcagcaaccaggagtagaggagtcctctttagctgacagc
agtggtgctgcaggggaagctgagcagcctgaagctaacggaacgacagctggcatacag
gctcagcctactgagcacaaattgaaggacacaaaagtcaagaaggaggcaggcagggca
ggggtctcagatgggtcagttctggagaggagccccactcttggagaggacagtgacaca
gaagtggacgaagatcacaaacctgggtttgcggacagtgagacagatgtggaagaagag
aggatccctgtgaccccccctgtagcccctgtgaagaaaaaccaagtgctacttgcagtt
ggtataggagatcctgaagcacctggtgtggcacatctgcaggactgcctagctggtagt
ggcacagatgtggaggacaagactgcactggatgtccctctagagagaaaccacacaccc
atggtgatcaacagtgatacagatgaggaggaggaggaggaggaggaggaggtctcagca
gcactcactttggcccatctgaaagagagaggaattggtttgtggagtagagacccaggc
gcagaagaggtcaagtcccaaccacaggtccttgtagaacaaagccagagtgcctctggg
agagacagtgacacggatgtggaggaggaatcctcagggcgaaagagagagattatccca
gacagtcccatggatgtagatgaggctcttactgtcacacagccagagagccagcctccc
cgtaggcccaatgatgcagatgagtacatggatatgagctcccctggcagccatctagtg
gtaaatcaggcctcctttgctgtggtaggcaagaccagagcacaagtggaggaggaagtc
ccagggccatctgttatcctgggggagaagcaccaggtgcctctagagggagcccagcct
cctgaggaagcctgggaaacagctgttcaggaaggctcatcctcaccagaggcagcagcc
tctgtaaggcctagccagcagccagtagcagaagatgctgggacagagtgtgctacagct
gtttctgagcaggaaagtactcttgaggtgaggtcccaaagcgggtcacctgcagcacca
gtggagcaagtggtgatacatacagatacttcaggggatcccaccctgccacagagagag
ggagcccaaacccccacaggaagggagagagaagcacatgtgggcaggaccaagagtgcc
aaagagtgctgtgatgcagaacctgaagatctgtgccttccagctacccagtgctttgtg
gaaggggagagccagcacccagaagctgtccagagtttggaaaatgagcctacccaactc
ttcccatgtactcttccacaagagccaggaccttcccatctcagccttcagactccaggt
gcagataccttggatgtgccttgggaagtcttggctacacagccgttctgtctaagagaa
cagtcagagacttctgagcttcatgaagctcatggatctcaaccatctctgcctagggaa
ccaccaggacaccaacatctggttcataccagcccagttcacacagagctgttgagaatt
gaaggcagagagatacagactgtggagaaagccatgggtataccaaaggaaatggcagac
aggatgacccctgagagagagccattggagagggaaatcaggggaagaacagaaaacagt
gagagagatgtgataggagaagaactaattcaggggacaaaggacagagagccaaagaag
gtgttagctagagacagtcagagaaaagaggctgacaaggatcttgaagggaatagggag
agtttggaggtagaaatagagatgtccaaagactcacagaagagagagagaaaagtagag
aaaccagaaccaaagagagaatgggagccagctgatttagaagtgactccagatagaggg
gtgacagaggaagggagccatgatcagaaagggcaaattgctagtctaacactaaagcct
ggagttggggtgaaggaccttgagggacttgcatcagccccaataatcacagggagccag
gcagatggaggaaagggagaccctttgagccctgggaggcagcagagaggccgcttgagt
tgccagacgacacctgctggaaaggcttccaggggtgatccagagcccccagaccactgc
ctgttttcttcagtgcctgaagcttcaactcagagtctcctcacctctcagagccaaaag
cagtctacacctcagcctctgttttcgacctcttcttctgagataccccttcctgagagt
cttcacacaaagcctaatgtcaggccacggcggtcctccaggatgaccccctccccgcat
tcctctgctgcccttaagccaaatactacctgccccacaaaccagcctgctgcctctaga
ccaacatcccgacccactcggggcagggcaaataggtcctctaccaggaccccagaactg
attgtccctgtagaccctgaactccagccttccacctccacagaacagcctgtcatccca
aaacttacgtcccaggtcactgagggcagggtacagatgcctgaaccacttctcacaggt
cccgagatccagtctcccacctccacagaacagtctgtcaccccagaccgcaaacctcgg
gccactcggggcaggccaagtaaatctcccaacaagaccccagaaccacttatttctact
ggccctgaactccaacctcccacctccatagaacaacctgtcatacctaaacccacttct
cgggtcactcggggcagaccacgtaagtcttctgtcaggaccccagaatcagttgtctcc
actggccctgaacttcagcctctcacctctatagaacagcctgttatccctgaacctagg
gccactcgaggtagaccaagtaagtcttctatcaagaccccagaatcagttgtccccact
ggtcctgagctgcagcctcttacctctgcaaaacagcctgtcacccctaacctcacatct
cgggcctctcggggtagatcaagtaagtctatcaggaccccggaaccagttgtccaaact
ggccctgaattccatccatccacctccacagaacagcctgatacccgtgagccctcatct
caggctaggacacgtaggtctgctgtcaagactcctgaagcgagtgtccccacaacccct
gaactccagcctttcacttctaaaaaacagcctgcccctaagcctacagctctggtcact
cagggaaggacatataaaccctccactgaagattgtgaatcagttgggccagtggcccct
gattttgagccttccacctctacagaccatcttgtcacccctaaggttacagatcagagc
ttaacactacagtcttcacccctaagtgcttccccagtttccagtacccctgatctcaag
cctcctgtccccatagcccagcctgttaccccagagcccattccacaagccaatcaccaa
aggaaacgaagggctgctgggaagcagggttcccgcacagtccctctgggtcataagtct
tactctgccctctctgaacctgagccccaatcttcagccagccaaagctcaggagcatca
gaagcagactcaccccgtcaaaaacgtcccagaagacaagcctcccagaaaactgtagtc
atcaaggaagaacctgtagaaacagaagtgaaggaagagcctcaagagactgcaattcca
acaccagaaaagagaaagagggaccatgcagaagaagtgacccagggaaaaccaactcga
agccggcgaactaaacctaaccaagaaacagcccccaaggtactgttcacaggagtcatg
gattctcgtggcgagcgtgcagtgctggctctgggaggcagtctggccagctcagtaaat
gaggcctcccacttagttactgatcgcatccgcaggacagtcaagttcttgtgtgccctg
gggaagggaattcccatcctgtccctgaactggctgtaccagtcccgaaaggctggttgc
ttcttgccgcctgatgactacttagtgactgatcctgagcaagagaagaactttagcttc
agccttcgggattccctgtgccgggctcgggaacgaagactgctggaggactatgagatt
catgtgacccctggcgtgcagccacccccccctcagatgggcgagatcatcagttgctgt
ggaggcactttcctgcccagcatgcctcactcctataagcttcaccgagtcatcataact
tgcactgaagacctaccacgctgtgctattccatcccgcctggggctacccctcctctct
cctgagttcctcctgactggagtgctgaagcaggaagccacaccagaggcctttgttctc
tccaatttggaaatgtcatctacctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (88)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (81)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (13)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (10)   
DNA sequence (20)   
   RefSeq(nuc) (10)   
   GenBank (5)   
   EMBL (5)   
3D Structure (2)   
   PDB (2)   
Protein domain (5)   
   Pfam (5)   
All databases (131)   

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