KEGG   Mus musculus (house mouse): 271564
Entry
271564            CDS       T01002                                 
Symbol
Vps13a, 4930425F11, 4930516E05Rik, 4930543C13Rik, 9930023P20, Chac, Chorein, D330038K10Rik, mKIAA0986
Name
(RefSeq) vacuolar protein sorting 13A
  KO
K19525  vacuolar protein sorting-associated protein 13A/C
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mmu04131]
    271564 (Vps13a)
Membrane trafficking [BR:mmu04131]
 Endosome - Golgi transport
  Rab GTPases and associated proteins
   Rab associated proteins
    271564 (Vps13a)
SSDB
Motif
Pfam: VPS13_mid_rpt VPS13_ext_chorein VPS13_DH-like VPS13_VAB Chorein_N VPS13_C ATG2-VPS13_C
Other DBs
NCBI-GeneID: 271564
NCBI-ProteinID: NP_766616
MGI: 2444304
Ensembl: ENSMUSG00000046230
UniProt: Q5H8C4 Q6P6M9
Position
19:complement(16592730..16758433)
AA seq 3166 aa
MVFESVVVEVLNRFLGDYVVNLDESQLSLGIWKGAVALKNLVIKENALHELDVPFKVKVG
HIGSLKLKIPWKNLYTQPVEAVLEEIFLLIVPSSRIQYDPIKEEKQLMETKQQELKRIEK
AKQKVFDKEKPREEKQDTFTEKLVTQIIQNLQVQISSIHIRYEDDITNGDKPLSFGISLQ
NISLQTTDQYWIPCLHDNTEKLVRKLIRLDNLFAYWNVNSEMFYLNDYDESLKALKNGIV
NENIVPEGYDFVFRPISASAKLQMNRRSDFDFSDPKINLAVDLHTIAIEFNKPQYFSLME
LLESIDMMTQNQPYRKFKPSVPLHLHAKEWWAYAIHSILEVNVCPSLRMWSWEHIRNHRY
KMKRYREFYKKKLTSKKPSPEILMSLEELEKTLDVFNITIARQQAEVEAKKAGYKIYKEG
VKDPEDNAGWFGWLWTWSESNANQQQDVKPGILEEMLTPEEKSLLYEAIGYSETAVDPTL
PKTFEALKFFVHLKSMSIVLRENHQKPELLNVVVEGLSTSVVQRPGAQAIKFETKIDSFH
ITGLPDDFKKPHLLSSLDDTSLLQITFEINPLNETVAQRCTIEAEPLEIIYDARTVNSIV
EFFRPPKDVHLAQLTSVTLTKLEEFRAKTATGLLYVIETQKVLDLRINVKASYVIVPQYG
NFSPTSNLLLLDLGHLKVSSKRRSLLPDVRPSEASLEDIMHRAYDSFDIQLTSIQLLYSR
VGDNWKEARKLNVSTQHILIPMHVNVELSKAMVFMDIKMPKFKISGKLPLVSLRISDKKL
QGIMELLGSIPKPEPVTDVSAPARSFQIQASALPVSHISQKLIPLLEQPVTEDDSEEEFF
DAPCSPLEECPQVSCRDKCTRQKKLQKKDCVMNLIQLRMRFEVAEVSIQFYHLVGDCELP
VLEMGALGLGTEAEFRTFDLKGSAFLKELWLKCPEYLDENKKPVYLITTLDNTMEDLLTL
EFMKVEKNAPNLNSTYNNVLQLIKVNFSSLDIHLHTEALLNTMNYLNNILPELREKSASV
SAAEPEDKGDIIKKLALKLPTNEDIITLQLLAELSCLQIFIQDQKQNISEIKIEGLDSEM
IMKPLVTEINAKLRNIIVLDSDKMAIYKKALYITGKEVFSFKMISYMDATAGYAYTDMSV
VDIRVHLTVGCIEVVFITKFLYSILAFIDNFQAVKDALAEATVQAAEMAADGVKELARKS
SRFALDVNIKAPVVLIPQSPVSQNVFVADFGLITMKNIFVTVTETQSNIPPVIDLITIKL
SKMRLYRSQFRNDTYQEVLDLLLPLNLEVIVERNLSWEWYKEVPCFNIKAQLKPMEFILS
QEDLTTVFQTLHGNIWYGQDLSAPSSANKDPETMTSGVTSPPDHSPATVVTAAVVEVHPQ
ASQAHTMLNVSFQTDYLTMALYSPGPDEASFTDVRDPSLELAEFKLENIISSLKIYTDDS
TVFSFSVKNCILDDKRSHVMKATPRMIGLTVGFDKKDMVDIKYRKIKTFVVTDAVVQEMY
VCASVEFLMTVAHIFFDAYMTSTALETSVQTRTTREAPAQELGKWEMNILIKNPEIVFVA
DMTRNDAPALVITTQCEICCKGEPTSNTVTAAIKDLQVRACPFLPVKRKGKVTTVLQPCD
LFYQATQLGRDPQMIDISVKSLTLKVSPVIINTIITITSALYTTKETVPEENTSNIAHLW
DKKDTKNLKMWFLEESNESEKVVPTNEVMPGGETLNLRIDSIFIVLEAGIGHRTVPMLLA
KACFSGESKNWLSLINLHCHLELEVHYYNEMFGVWEPLLEPLEIDQTDDFRPWNLGIKMK
KKAKEAIVESDSEAENYKVPEYKTAISFYSRDQLNITLSKCGLVMLNNLVEAFTEAATGS
SSVFLRDLAPFMIFNSLGLTVSVSPSDSFSVLNVPLAKSYELKNDESLSMDYVRTKDNDH
FNAMTSLSSKLFFILLTPANHSVADKIPLTKVGRRLYTVRHRESGVERSIICQIDTVEGS
KKVTIRSPVQIKNHFSIPISVFEGDTLLGIASPENEFNIPLASYRSSLSLVPEDQDYQLC
EGIDFEEIIKYDGQLLKKKCRSTNPSKKSFVINIVPEKDNLASLSVYSEDGWDLPYVLHL
WPPILIRNLLPYKVAYYIEGIENTVVTLSEGHSSQIYNVEMDQAKLHLKLLDYLNHDWKS
EFYIRSSQQDINFINFTCLTEMEKSDLDIAIHMTYNTGQTVVAFHSPYWMVNKTNRMLQY
KADGIHRKHPPNYTKPVLFSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAIRCKG
LKMEYQVGVTINLSSFNITRIVTFIPFYMIKNKSKYHISVAEEGSDKWLSLDLEQSIPFW
PENASNILLIQVERSEDPPKRIYFNKQDNCILLRLNNELGGIIAEVNLAEHSTVITFSDY
HDGAATFLLINHTKSDPVQYNQSSLGEIEDSLPPGKAVYYTWADPVGSRKLKWSCGQSYG
EVTHKDDMMTPISVGKKTIYLVSFFEGLQRIILFTEDPRVFKVTYESEKAELAELEVVLA
LQDVGISLVNNYTKQEVAYIGITSSDVVWEAKPKKKARWKPMSVKHTEKLEKEFREYTEA
SPLEDKVVELDNIPVRLTPSGNDMKILQPHVIPVRRNYLPALKVEYNTSAHQSSFRIQIY
RIQIQNQIHGAIFPFVFYPIKPPRSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKVLI
QEMDLSLDLGFVYALADLVTKAEVTEKTEVEHFHKDVEAFEQEYEVVSSVDQSQVNLFEY
FHISPIKLHLSVSLSSGRDEAKDSEQHGGLIPVHSLNLLLKSIGATLTDVQDVVFKLAFF
ELNYQFHTTSELQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFYEPY
QGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREA
MNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVTR
PTGGIIDMASSTFQGIKRATETSEVESLRPPRFFNEDGVIRPYRLRDGSGNQMLQVMENG
RFAKYKYFTHVMINKTDMFMITRRGVLFVTKGTFGQLTCEWQYTFDEFTKEPFIVHGRRL
RIEAKERVKSVFHAKEFGKIVNFKTPEDARWILTKLEEAREPSPRL
NT seq 9501 nt   +upstreamnt  +downstreamnt
atggtattcgagtcggtggtcgtggaagtgttgaaccggttcctgggagactatgtggtg
aacctggacgagtcccagctctccctgggcatttggaaaggagctgtggccctcaagaac
cttgtaattaaagaaaatgcattgcatgaattggatgtaccattcaaagttaaagttggt
catataggtagtcttaaacttaaaattccatggaaaaacctttatactcaaccagttgaa
gctgttttggaagaaatttttttactcatagtgccttcttctagaatacagtatgatcct
atcaaagaagaaaagcaactcatggaaacaaagcaacaggaactaaaaagaatagaaaaa
gcaaaacagaaagtatttgataaagaaaagcctcgggaggagaaacaggacacgtttaca
gaaaagttagttactcagatcatacagaaccttcaagtgcaaatctccagcatccatatt
cgttatgaagacgatatcacaaatggagacaaaccactctcttttggtatttcccttcaa
aatatcagccttcagacaactgatcaatactggatcccatgtttacatgataatactgaa
aagctagtccggaagctaatccgattagataatctctttgcttactggaatgtgaactct
gagatgttttatctgaatgattacgatgaatcgctgaaagccttgaaaaatggtattgtg
aatgaaaatattgttccagaaggttatgattttgtttttcgacctatatctgctagtgcc
aaacttcagatgaatcgacgatcagattttgacttttctgaccccaaaataaacctggct
gttgatttacataccatagcaattgagtttaataaaccacagtatttcagcctcatggag
cttctcgagtcaattgacatgatgacacaaaaccagccgtacagaaagttcaagcccagt
gtgcctctccacctccacgccaaagagtggtgggcttatgctatacatagtattcttgaa
gtaaatgtttgtcccagtttacggatgtggtcgtgggagcatattagaaaccatagatac
aaaatgaaacgatacagagaattttataagaaaaaattaacaagtaagaagccatctcct
gaaattctcatgtctttggaggagttggagaaaactttggatgtttttaatataaccata
gctagacaacaggcagaagttgaggcaaagaaagctggatataaaatttacaaagaagga
gtcaaagatccagaagataatgcaggatggtttggctggttgtggacttggtcagaatca
aatgctaatcaacaacaagatgtgaagcctggaattctggaagaaatgttgacacctgaa
gaaaagtcgttactttatgaagcaattggttatagtgaaacagcagttgacccaaccttg
ccaaaaacatttgaagccttgaagttttttgttcacttgaaaagcatgtctattgttcta
agagaaaatcaccaaaagccggagctgttaaacgttgtagtggaaggacttagtacttct
gttgtgcaaagaccaggagcacaagccataaaatttgaaaccaaaattgattcatttcat
attactggcttaccagatgatttcaaaaaaccccacctactgtcttcattggatgatacg
tcactcctccagattacatttgagataaatcctttaaatgaaactgttgctcagaggtgc
accatagaggctgagcctctagagataatatatgatgcaaggacagtcaatagtatagtg
gagttcttcagacctccgaaagatgtccatctagcccaacttacttcagtaactttgaca
aaacttgaagaatttcgagcaaaaacagcaacaggtttgctgtatgttattgaaacacag
aaagttcttgatctcagaattaatgtaaaggcttcatatgttattgtcccacaatatgga
aattttagccctacgtcaaatctacttctcctggatcttggtcatttaaaggtgtcaagt
aagcgtcgatcactgctgccagatgtgagacccagtgaggccagccttgaagatataatg
cacagagcgtatgactcctttgatattcagcttacgagcatacagttgctctacagtaga
gtgggtgataattggaaagaggcacgaaagctcaatgtatctacacagcatattttgata
cctatgcatgtcaatgtggagctctctaaagccatggttttcatggatatcaagatgccc
aaattcaagatttctggaaagttacctcttgtttcattacgaatttcggataaaaaactg
caaggcattatggagttgttgggaagcattccaaagcctgaacctgtaactgatgtatct
gcccctgccagatcattccagattcaagcatctgctttgccagtatcacacatttctcag
aagttaatccctttattggaacagcctgttactgaagatgactcagaggaagaatttttt
gatgcaccatgtagtcccttggaggagtgtcctcaagtgtcatgtagagataaatgtact
cgacagaaaaaattacaaaagaaagattgtgtgatgaatcttattcaacttaggatgaga
tttgaagtagcagaggtgtccattcagttttatcacctggtgggagactgtgaactacct
gtgctggaaatgggtgctttaggattgggaacagaagctgagtttagaacatttgacttg
aaaggaagtgcctttttgaaagaattatggctaaaatgtccagaatatttagatgaaaac
aagaaaccagtttatttgatcacgaccctggataacacaatggaagatttattaacattg
gaattcatgaaggttgaaaaaaatgcaccaaatttgaatagtacctataacaatgtttta
caacttattaaggtgaatttttcctctttggatattcatttacacactgaagcacttctg
aatacaatgaattatcttaataatattcttccggaattaagggaaaaatctgcctcggtg
tctgctgcagagccggaagacaaaggggacatcattaaaaaacttgctttaaagctaccc
acgaatgaagatattattaccttgcagcttttggcagaattatcttgtctacagattttt
attcaggatcagaaacaaaacatttctgaaattaaaattgaagggcttgattctgagatg
attatgaaacctctagtcactgaaataaatgcaaagctaaggaatataattgtgttagat
tctgataaaatggctatctacaaaaaggctctttatatcactggaaaagaagttttcagc
ttcaaaatgatttcttacatggatgcaactgctggctatgcatacacagatatgagtgtg
gttgacattcgggttcatttaactgttggttgcattgaagtagtgttcatcacaaaattc
ctgtattctatattggcatttatagataattttcaagcagttaaagatgccttggctgaa
gcaactgttcaagcagcagagatggctgctgatggtgtaaaggaactggctcgaaagagc
tctaggtttgcattggatgttaacatcaaggctccagttgtgctcattccacagtctcca
gtgtctcagaacgtttttgttgctgattttggattaattacaatgaaaaatatatttgtt
actgtaacagagacccagagtaatatcccacctgtaattgatttgataacaataaagttg
agtaaaatgagactatacaggtctcagtttaggaatgatacataccaggaagtgctggac
ctgctactacctttgaacttggaagtgattgtcgaacggaacttatcctgggaatggtac
aaggaagtcccttgttttaatataaaagctcagctaaagcccatggagttcattcttagt
caggaagacttaacaaccgtctttcaaacattgcatggcaatatatggtatggacaagat
ctgagtgctccatcttctgcaaataaggacccagagaccatgaccagtggggtcaccagt
cctcctgaccattcgccagctactgtggtgaccgctgctgtggtggaggtgcacccacag
gcttctcaagcgcacacgatgctgaacgtgagcttccagaccgattacctcaccatggca
ctctacagtccggggccggatgaggcctcctttacagatgttcgcgatccttctctggaa
cttgctgaatttaagttggagaatattataagtagtttaaaaatatatacagatgattct
acagtcttttctttctcagtaaaaaactgtattttagatgataaaaggtcacatgtcatg
aaagccactcctagaatgataggattgactgttggctttgacaagaaggacatggtggat
ataaagtatagaaaaatcaaaacttttgttgtgactgatgcagttgtccaagaaatgtac
gtttgtgcgagtgtggagtttctgatgactgttgcccatatcttttttgatgcctacatg
actagtacggctttagaaaccagcgttcaaacaaggactactagagaagcacctgcacag
gaattagggaagtgggaaatgaatattcttattaaaaatccagagattgtgtttgtggct
gacatgacaagaaacgatgctcctgccttagtcattacgacacagtgtgaaatttgctgc
aaaggtgaacctacaagcaatacagtgactgctgccattaaagatctccaagtcagagcg
tgcccatttcttccagtcaagagaaagggcaaagtcaccactgttttgcagccttgtgac
ttgttttatcaggctactcaattaggtagagatccacaaatgattgatatatcagtaaaa
tctcttacgctaaaggtttcaccagttatcataaataccataataactattacttcagca
ctttacacaactaaggaaactgtcccagaagaaaacacttctaatatagcacatttatgg
gacaagaaggatacaaagaatctaaaaatgtggtttcttgaagaatcaaatgaaagtgaa
aaagtagttcccacgaatgaagtgatgccgggaggagagacactgaacttgcgtattgat
tctatttttattgttctggaggctggaatcggtcatagaacagtgccgatgctgttggca
aaggcgtgcttctcgggggaaagcaaaaactggctctctctaatcaatcttcactgtcac
ctggaactggaagttcactattataatgaaatgtttggtgtttgggaacctttactggaa
cccttagaaattgatcagactgatgattttagaccctggaatctgggcatcaagatgaaa
aagaaagcaaaagaggccattgttgagtctgacagtgaagcagaaaactacaaagtacca
gaatataagactgccataagtttttattctagagaccagttaaacattacattatccaaa
tgtggccttgtgatgttaaataatttagttgaggcgtttactgaagctgctactggatcg
tcatctgtcttcctaagagatctagcaccattcatgattttcaattctcttggacttact
gtctctgtctcaccaagcgattcttttagcgttctcaacgttcctttggcaaaatcatat
gaactgaaaaatgatgagagtttaagtatggattatgtacgaacgaaggacaatgatcat
ttcaatgcaatgaccagcctaagcagcaagctcttcttcattctccttacgcctgctaac
cactctgtcgctgacaagatccctttaacaaaagtgggacgccgtctgtacactgtaaga
cacagagaatctggggtcgaaagatctatcatttgtcaaattgacacagttgaaggaagt
aagaaggtaacaatccgctcaccagtgcagattaagaatcatttttcaatcccaatttcc
gtttttgaaggagatactttattgggaattgcttcacctgaaaatgaatttaacatacca
ttagcatcttaccgatcatccctttccctggtgccagaagaccaggactaccagctatgt
gaaggaatcgactttgaagaaatcataaaatatgatggacagcttctgaagaagaaatgt
agatctacaaacccttctaagaaatcatttgttattaatattgtcccagaaaaggataat
ttggcttccctgtcagtgtattcggaagatggttgggacttaccatatgtcctgcacttg
tggccacccatcctcatccggaaccttcttccctacaaagttgcttattacattgagggc
attgagaacactgttgttactctaagtgaaggacattcatcacagatctataatgtagaa
atggaccaagccaagctacacttaaaattactcgactatcttaatcatgattggaaaagt
gaattttatataagatctagtcaacaagacatcaatttcatcaactttacctgtctcaca
gaaatggaaaagagtgacttggatattgctatccatatgacttacaacactggtcagaca
gttgtggcatttcatagtccgtattggatggtcaataaaaccaatcggatgctacagtac
aaagcagatggaattcaccgaaagcatccacctaattatacaaaaccagttctcttttcc
tttcagccaaatcacttttttaacaacaataaggttcagcttatggtaactgatagtgag
ctttcagatcagttttcaattgatactgttggtagtcatggagccattagatgcaaaggt
ctgaaaatggaataccaagttggtgtcactataaatctcagcagttttaacattaccaga
attgtgacatttattccgttttatatgattaaaaacaaaagcaaataccatatatcagta
gcagaagaaggaagtgataaatggctttctcttgacttagagcagagtatccccttttgg
cctgagaatgcctccaatattcttcttattcaagttgagaggagtgaagatcctccaaaa
aggatatattttaacaagcaagataattgtattttattgagactgaataatgagcttgga
ggtattattgcagaagttaatttggctgagcactctacagttattacattttcagattac
catgatggagcagctacattcctattaataaatcataccaagagtgaccctgttcagtac
aaccaaagttctctcggtgaaatagaagattctcttcctcctggaaaagcagtctattat
acatgggctgacccagtgggctctagaaagctgaagtggagctgtgggcaaagctatggt
gaagtaacccataaggatgatatgatgacgcccataagtgtggggaaaaaaaccatttat
ttagtgtcgttctttgaaggcctgcagcgtattattttattcactgaagatccaagagtg
tttaaagtaacgtatgaaagtgaaaaggcagagttagcggagctggaagttgtgctggcg
ttacaggatgtcgggatttcacttgtcaataactatacaaagcaagaagtagcctacata
ggcattacaagttctgatgtggtttgggaggcaaaaccaaagaagaaggccaggtggaag
cccatgagtgtgaagcacacagagaagctggagaaggagttcagggagtacacagaggcc
tcgcccttggaggacaaagtggtcgagttggacaacattccggttcgtttaacacctagt
ggcaatgacatgaaaattctgcaaccacatgtgatacctgtccggagaaattacctgcca
gcactaaaagtagaatataacacatctgcacatcagtcgtcattcagaattcagatttat
agaatacagatccaaaatcagattcatggtgctattttccctttcgtgttttatcctatt
aaacctccaagatctgtcaccatggactcagcaccaaagccgtttacagatgtcagtatt
gtcatgagatctgcaggacattcccaaatatcacgcattaagtatttcaaagtgttgatt
caagaaatggacctcagtttggatcttggatttgtgtatgccctagcagaccttgtcaca
aaagctgaagtgactgagaagacagaggtggaacattttcataaggatgtagaagcattt
gaacaagaatatgaagttgtttcatcagtagatcaatcacaagtcaatctctttgaatat
tttcatatatctcctatcaagttgcacttgagtgtttccctgagctctggtagagatgaa
gcgaaagactcagaacaacatggaggactaattcctgttcattcgttaaatcttttgctg
aagagtattggtgccaccctcacagatgtacaagatgtagtttttaagcttgcctttttt
gaactcaactaccagttccatacaacatctgaattgcaatctgaagtaataagacactat
tccaaacaggctattaaacaaatgtatgtactcattcttggacttgacgtcttgggaaat
ccctttggcttaattagagaattttcagaaggagtagaagcgtttttttatgaaccttac
cagggggctatccagggtcctgaagagtttgtggagggaatggcgctaggattgaaagca
ctagttggtggagccgttggtgggctagctggtgctgcctccaaaatcaccagtgctatg
gctaaaggagtagcggccatgaccatggatgaagactaccagcagaagaggagagaagca
atgaataagcagcctgctggccttcgagagggcatcactcgaggaggaaaaggccttgtc
tctggttttgtaagtggcattacagggattgttacaaagccaattaaaggtgctcaaaag
gaaggagcagcaggtttcttcaaaggtgttggaaaaggtttagttggagcagtgacaagg
ccaacgggtggcatcatagacatggccagcagtacctttcagggaatcaaaagagctaca
gagacttctgaagtagagagtttacgacctcccagattctttaatgaagatggagtcatc
agaccttacaggttgcgcgatggttcaggaaatcaaatgttacaggtcatggaaaatgga
agatttgcaaaatacaagtattttacccatgtcatgatcaataaaacagatatgttcatg
ataacaagacgtggcgtgttgttcgtaacaaagggaacatttggacagcttacatgtgag
tggcagtacacttttgatgaattcaccaaagagccgttcattgtccatgggagaagactg
cgcattgaagccaaggaacgggtgaagtctgtattccatgccaaagaatttggaaaaatc
gttaacttcaagactccagaagatgctaggtggatcctcacaaagctggaagaagcgaga
gaaccatccccgagactgtga

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Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (62)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (53)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (7)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (68)   
   RefSeq(nuc) (4)   
   GenBank (32)   
   EMBL (32)   
Protein domain (7)   
   Pfam (7)   
All databases (147)   

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