KEGG   Mus musculus (house mouse): 28035
Entry
28035             CDS       T01002                                 
Symbol
Usp39, CGI-21, D6Wsu157e, SAD1
Name
(RefSeq) ubiquitin specific peptidase 39
  KO
K12847  U4/U6.U5 tri-snRNP-associated protein 2
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    28035 (Usp39)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mmu03041]
    28035 (Usp39)
Spliceosome [BR:mmu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP specific factors
    28035 (Usp39)
SSDB
Motif
Pfam: UCH zf-UBP UCH_1 zf-UBP_var
Other DBs
NCBI-GeneID: 28035
NCBI-ProteinID: NP_613058
MGI: 107622
Ensembl: ENSMUSG00000056305
UniProt: Q3TIX9
Position
6:complement(72295749..72322190)
AA seq 564 aa
MSSRSKRQSHGSTRGKRESESRGSSGRIKKERDREKEPEAASSRGSPVRVKREAEPAARE
VPAPALPVVRVKREREADEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDFE
KLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEI
IDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQ
ALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQ
AVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVNDVFQGSMRIFTKKLP
HPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAK
FNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLR
EYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQM
ITLSEAYIQIWKRRDNDETNQQGA
NT seq 1695 nt   +upstreamnt  +downstreamnt
atgtctagccggtccaagcggcagtcccatggttccacccgcgggaagcgtgagtccgag
tctcgtggcagctcgggtcgcatcaagaaggagcgagaccgtgagaaggagcccgaggcg
gcgagctcccggggtagcccggtccgcgtgaagcgggaggccgagccggctgcgcgagag
gtcccggcgcccgcgctcccggtcgtgcgggtgaagcgtgagcgcgaggccgatgaagac
tcggagcccgagcgggaggtgcgagcaaagaatggccgagtggattctgaagaccggagg
agtcgtcactgcccgtacttggataccattaataggagtgtgctggacttcgactttgag
aaactctgctccatttctctctcgcacatcaacgcatacgcctgtctggtgtgtggcaag
tactttcaaggccggggcttaaagtctcatgcctacatccacagtgtccagttcagccac
catgtcttcctcaacctccacactctcaagttttactgccttcctgacaactatgaaatc
attgattcctcgctggaggatatcacgtatgtgttgaagcctactttcacaaagcagcaa
attgcaaacttggataagcaagccaaattgtcccgggcatatgatggcaccacttacctg
ccagggatcgtgggactgaacaacataaaagccaacgactatgcaaatgctgtgctgcag
gctctatctaatgtccctcctcttcggaactacttcctggaggaagacaattacaagaac
atcaagcgtcctccgggggacatcatgttcttgttggttcagcgttttggagagctgatg
agaaagctctggaacccccgaaacttcaaggcgcatgtctctcctcatgagatgcttcag
gctgtcgtactttgcagcaagaagactttccaaattaccaaacaaggggatggagttgac
ttcctgtcttggtttctgaatgctctgcactctgctctgggaggcaccaagaagaagaaa
aagactattgtgaatgatgttttccagggatcaatgagaattttcaccaaaaagcttcct
catcctgatctgccagcggaagagaaagagcagctgctccacaatgatgagtaccaagag
acgatggtagagtccacgttcatgtacctgacgctggaccttcccacggccccgctctat
aaggatgagaaggagcagctcatcatcccccaggtgcctctcttcaacatcctggccaag
ttcaacggcatcacggagaaggaatacaagacttataaggagaacttcctgaaacgcttc
cagctcaccaagctgcctccgtatctaatcttttgcatcaagagatttactaagaacaac
ttctttgtggagaagaatccaacaattgtcaacttccctatcacaaatgtggatctgaga
gaatacttatctgaagaagtccaagccgtccacaagaacaccacctatgatctcatcgcc
aacatcgtgcatgatggcaagccctctgagggctcctacaggatccacgtgcttcatcat
gggactggcaagtggtatgaattacaagacctccaggtgacagacattctgccccagatg
atcacactgtctgaggcgtacattcagatttggaagaggcgggacaatgatgaaaccaac
cagcagggggcttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (42)   
   RefSeq(nuc) (4)   
   GenBank (19)   
   EMBL (19)   
Protein domain (4)   
   Pfam (4)   
All databases (73)   

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