KEGG   Mus musculus (house mouse): 28088
Entry
28088             CDS       T01002                                 
Symbol
Rtcb, D10Wsu52e, FAAP, HSPC117
Name
(RefSeq) RNA 2',3'-cyclic phosphate and 5'-OH ligase
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mmu03016]
    28088 (Rtcb)
Enzymes [BR:mmu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     28088 (Rtcb)
Transfer RNA biogenesis [BR:mmu03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    28088 (Rtcb)
 Prokaryotic type
   tRNA splicing ligases
    28088 (Rtcb)
SSDB
Motif
Pfam: RtcB Cu-oxidase_4
Other DBs
NCBI-GeneID: 28088
NCBI-ProteinID: NP_663397
MGI: 106379
Ensembl: ENSMUSG00000001783
UniProt: Q99LF4
Position
10:complement(85774501..85793657)
AA seq 505 aa
MSRNYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgagtcgtaactacaacgatgagctacagttcttggacaagatcaataaaaactgctgg
aggatcaagaagggctttgtgcccaacatgcaggttgaaggagtgttttatgtgaatgat
gctctggaaaaactaatgtttgaggaattaaggaacgcctgtcgaggtggtggtgttggt
ggctttctgccagccatgaagcagattggcaatgtggcagccctgcctggaatagttcat
cggtctatcgggcttcctgatgtccattcaggctatgggtttgccatagggaacatggct
gcctttgatatgaatgaccctgaggccgttgtatccccaggtggtgtcggatttgatatt
aactgtggtgtccgcttgctaagaaccaatttagatgagagcgatgtacagcctgtgaag
gaacaacttgcccaagctatgtttgaccacatccctgttggggtgggatcaaaaggtgtc
attccaatgaatgccaaagacttggaggaggcattggagatgggggtggactggtccctg
agggaaggctatgcctgggctgaagacaaggagcactgtgaggagtatggaaggatgctg
caagccgaccccaataaggtctcacccagggcaaagaaaaggggccttcctcagttgggg
accctgggagcaggcaaccattatgcagaaatccaggttgtagatgagattttcaatgag
tatgccgccaagaagatgggcatcgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtagctacagatgcactggtagctatggaaaaggcc
atgaagagagacaagattatagtcaatgaccggcagttggcttgtgctcggattgcatcc
ccagagggacaagactatctaaagggaatggctgcagctggaaactacgcctgggttaac
cgctcctctatgaccttcttaacccgtcaggcttttgccaaagtcttcaacacaacccct
gatgacctggacctgcatgtgatctatgatgtgtcgcacaatatcgccaaagtggagcag
cacgtggtggatgggaaggaacggacgctgctggtgcacaggaagggatccacccgtgct
ttcccgcctcaccaccccctcattgctgtggattatcaactcacaggacaaccagtgctt
attggtggcaccatggggacctgtagttacgttctgactggcactgaacaaggcatgact
gagacctttggaacaacctgtcatggagcgggccgtgctttgtccagagcaaaatcacgt
cgtaacttagatttccaagatgtcttagacaaactggcagacatgggaattgcaatccgg
gttgcttcccccaagctggttatggaagaggcaccagagtcctataagaatgtgacagac
gtcgtgaacacctgccatgatgctgggatcagcaagaaggccattaaactgagaccaatt
gctgttattaaagggtag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (55)   
   RefSeq(nuc) (1)   
   GenBank (27)   
   EMBL (27)   
Protein domain (2)   
   Pfam (2)   
All databases (80)   

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