KEGG   Mus musculus (house mouse): 381305
Entry
381305            CDS       T01002                                 
Symbol
Rc3h1, 5730557L09Rik, Gm551, mKIAA2025
Name
(RefSeq) RING CCCH (C3H) domains 1
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mmu03000]
    381305 (Rc3h1)
   04121 Ubiquitin system [BR:mmu04121]
    381305 (Rc3h1)
Transcription factors [BR:mmu03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    381305 (Rc3h1)
Ubiquitin system [BR:mmu04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    381305 (Rc3h1)
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4_4 Prok-RING_4 zf-CCCH zf-C3HC4_3 zf-C3HC4 zf-C3HC4_2 FYVE zf_CCCH_4 zf-CCCH_4 Vesi_VP2 PaaA_PaaC Baculo_IE-1 TPD52 zf-RING_4 zf-RING_6 zf-RING_10
Other DBs
NCBI-GeneID: 381305
NCBI-ProteinID: NP_001020123
MGI: 2685397
Ensembl: ENSMUSG00000040423
UniProt: Q4VGL6
Structure
Position
1:160733981..160802546
AA seq 1130 aa
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQIPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAPILSDE
SAVDLSNRKPPALPNGIASSGSTVTQLIPRGTDPSFDSSLKPVKLDHLSSSAPGSPPDLL
ESAPKSISALPVNPHPVPPRGPTDLPPMPVTKPIQMVPRGSQLYPAQQADVYYQDPRGSA
PAFETAPYQQGMYYTPPPCVSRFVRPPPSAPEPGPPYLDHYSPYLQDRVINSQYGTQPQQ
YPPMYPAHYDGRRVYPAQSYTREEMFRESPIPIDIPSAAVPSYVPESRERYQQVEGYYPV
APHPAQIRPSYPRDPPYSRLPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTL
PPAFHPEEFLDEDLKVAGKYKANDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEMMN
VESKGTREQRLDLQRRAVETSDDDLIPFGDRPTVSRFGAISRTSKTLYQGAGPLQAIAPQ
GAPTKSINISDYSAYGAHGGWGDSPYSPHANIPPQGHFIEREKMSMAEVASHGKPLLSAE
REQLRLELQQLNHQISQQTQLRGLEAVSNRLVLQREVNTLASQPQPPQLPPKWPGMISSE
QLSLELHQVEREIGKRTRELSMENQCSVDMKSKLGTSKQAENGQPEPQNKIRTEDLTLTF
SDVPNGSALTQENLSLLSNKTSSLNLSEDSEGGGDNNDSQRSGVVSNSAP
NT seq 3393 nt   +upstreamnt  +downstreamnt
atgcctgtacaagctccacaatggacggatttcctttcctgcccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagtttgggctgtggccatactgtctgcaaaatg
tgcctgaataaactccaccgtaaggcttgcccatttgaccagaccactatcaatacggac
attgagcttcttcctgtgaactcagcattactgcagctagtgggtgctcagatccctgag
caacagcccattactttgtgtagtggggttgaagatacaaagcattatgaggaagccaag
aaatgtgtagaagaattagcattgtacctgaagccactcagcagtgcgagaggtgtgggt
ctaaatagcactactcagagtgttctgagtcgcccaatgcagaggaaacttgtgactctg
gttcattgccagctagtggaagaagaaggcaggatccgtgctatgagggctgctcgatct
ttaggtgaacgcacagttacagagctcattctccagcaccagaatcctcagcaactctct
tctaatctctgggcagcagtcagagctaggggctgccagttccttggaccagcgatgcag
gaggaagctctgaagctggtcttgctggccttagaagatggttctgcattgtctcggaaa
gtgttggttctcttcgtggtgcaaagactggagccacgttttcctcaagcctctaaaacc
agcattgggcatgttgttcagctcctctacagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttctttgatgcaactgaaagaagaatttaggacttacgaagctctgagg
agagaacatgactcccagatagtgcaaattgctatggaagctggcttaaggattgcacca
gaccagtggtcctctttgctttatggggatcagtctcacaaatctcatatgcagtctatt
attgacaagttacagacccctgcctcatttgcacagagtgttcaggagctaacaattgct
ctccagcggactggagacccagcgaatttgaaccgactaagaccccatttggagttactc
gcaaacattgaccctagtccagatgctcctcctccaacatgggaacagctagaaaatggg
ctggttgctgtacgtacggtagtgcatggattggttgattatatccagaaccacagcaaa
aaaggagcagatcaacaacagcctccacagcatagcaaatacaaaacatacatgtgtcga
gatatgaagcaaaggggaggatgccctcgtggtgccagctgtacgtttgcacattcacag
gaagaactggaaaagtttcgtaaaatgaacaaacgtctggttcccagaagacccttgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcagcacctatactttctgatgaa
agtgcagtggacttgtccaacagaaaacctcctgcactcccaaatggaattgcatcgtca
gggagcacagtgacacaactgattccacgtgggacagaccccagctttgattcttctctg
aaaccagtaaagctagaccacctgagcagtagtgctccggggtcccctcctgacctgctg
gaatctgcccctaagagtatttctgccttacctgtgaatccacatcctgtacctccaagg
ggaccaacagatctgcctcccatgcctgtcaccaaaccaattcagatggtacctcgaggt
tctcagctatatccagcacaacaagcagatgtttattatcaggatcctcgaggaagtgcc
ccagcttttgagacagcaccttaccagcagggtatgtactatactccaccaccatgtgtg
tcccgctttgtccgacctccaccatctgctcctgaacctggtcctccatacttggatcat
tattcaccctacctccaagatcgtgtcataaactctcagtatggcacacagccacaacag
tacccacctatgtacccagctcactacgatggccgccgtgtataccctgctcagtcttac
acaagagaggagatgttccgggaaagccctatacccattgacattccatctgcagcagtg
ccgtcctatgtacctgagtccagagaacggtaccaacaggtagagggttactacccggtg
gctcctcatccagctcagatcagaccttcataccccagggatcctccttatagtcggctt
cctcctccccaaccccatcctagtctggatgagctacatcgaaggcggaaggaaataatg
gcccagctagaggaaagaaaagtcatctctccacctccttttgcaccgtcaccaacattg
cctcctgcattccatccagaggaatttttggatgaagacttgaaggtagccggaaaatac
aaagcaaatgattatagccagtattctccttggtcatgtgataccatcggctcctacatt
ggaaccaaagatgcaaaacccaaagatgttgtggcagcggggagtgtggaaatgatgaat
gtagaaagtaaaggaacgagagagcagaggttggaccttcagagaagagcagtggagacg
agcgatgatgacctcatcccgtttggagaccgaccaacagtctctcgattcggtgccatc
tctcgaacatccaaaacactgtatcagggtgctggcccactgcaagctatagcacctcag
ggagcacccacaaaatctattaacatttccgattacagtgcatatggagctcatggtggc
tggggagattctccatactcacctcatgcaaacatacctcctcagggacacttcattgag
agggagaaaatgtccatggcagaagtggccagtcatggaaaaccccttctatctgctgaa
agagaacaattacggctagaattgcagcagctgaaccatcagatcagccagcagacccag
ctacgaggactagaggctgttagtaaccggctggtgttacagagggaggtgaacaccctg
gcaagccagccacagccccctcagctgcctccaaaatggcctggaatgatctcaagtgag
cagctcagcttggaactgcatcaggtggaaagagaaattgggaagaggacccgggaattg
agtatggagaaccagtgttctgtagacatgaaaagcaaactgggtacaagcaagcaagca
gaaaatggccagcccgagccccaaaacaagatccgcactgaggaccttacattgacattc
agtgatgtaccaaatggatcagccttgacacaagagaatctcagcctcctatcaaacaag
accagctctttgaatctgtcagaagactctgagggaggaggagataacaatgattcccag
agatcaggagttgtttccaattctgctccctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (21)   
   RefSeq(nuc) (1)   
   GenBank (10)   
   EMBL (10)   
3D Structure (7)   
   PDB (7)   
Protein domain (21)   
   Pfam (21)   
All databases (83)   

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