KEGG   Mus musculus (house mouse): 381404
Entry
381404            CDS       T01002                                 
Symbol
Pabpc1l, 1810053B01Rik, Epab
Name
(RefSeq) poly(A) binding protein, cytoplasmic 1-like
  KO
K13126  polyadenylate-binding protein
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03015  mRNA surveillance pathway
mmu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    381404 (Pabpc1l)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    381404 (Pabpc1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    381404 (Pabpc1l)
   03041 Spliceosome [BR:mmu03041]
    381404 (Pabpc1l)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     381404 (Pabpc1l)
   mRNA cycle factors
    Stress granule specific factors
     381404 (Pabpc1l)
Spliceosome [BR:mmu03041]
 Complex C
  Other components
   Complex C specific factors
    381404 (Pabpc1l)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 Nup35_RRM RRM_occluded SET_assoc RRM_3 xRRM E2R135
Other DBs
NCBI-GeneID: 381404
NCBI-ProteinID: NP_001107551
MGI: 1922908
Ensembl: ENSMUSG00000054582
UniProt: A2A5N3
Position
2:163866685..163892458
AA seq 607 aa
MDTGGHGCSLSSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFS
TFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKRE
AELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEK
HEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKN
LDDSINDERLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYRRRPSHPVLSSFQQPTSYLLPAVPQSTAQAVYYSSGSI
TPMQPDPRWTAQPHGPPSTCPPAASVVQPLSTTQHPCIHLRGASQVSSQVPHTQRVVNIG
TQTTGPGGEGSSIPGQLLVPHRGTSAVHSAHGVQESAVYVPGHQPLTVSMLAAAPLHEQK
QMIGERLYSLIHDACAPLTGKITGMLLELDNLELLLLLESPESLHAKIEEAVAVLQVHRE
MESTDRN
NT seq 1824 nt   +upstreamnt  +downstreamnt
atggacacaggtggccatggctgctcactctcctcgctctatgtgggcgatctgcacccc
gacgtgactgaatctatgctctatgagatgttctccccgatcggcaatatcctttccatc
cgcgtgtgtcgggatgtggctacccggcgctctctgggctatgcctacatcaatttccag
cagcctgctgacgcggaacgggcactagacacaatgaactttgaggtgatcaaaggccag
cccatccgaatcatgtggtcccaccgagacccaggccttcggaagtctggtatgggcaac
atctttatcaaaaacttggagaattccatcgacaacaaggctctgtatgacaccttctct
acttttgggagcattctctcttctaaggtagtatacaatgaacatggatcgcggggtttc
ggctttgtgcatttcgagacccacgaggctgcccagaaggccatcaacaccatgaatggg
atgttgctgaacgaccggaaagtctttgtaggccatttcaagtctcgacagaagcgggag
gcagagctgggggctcgggccctcgggttcaccaacatctatgtgaagaacctgcacgcg
aacgtggacgagcagaggctccaggacctcttctcccagtttggaaatatgcagagtgtg
aaggtgatgagagacagcaatgggcaatcccggggcttcggctttgtcaactttgagaag
catgaggaagcccagaaggccgtggaccacatgaatgggaaggaggtgagcgggcagctg
ctctatgtgggtcgggcccagaagcgggcagaacggcagagcgagctgaagcgcaggttt
gaacaaatgaagcaggagaggcagaaccgctaccagggtgtgaacctttatgtgaagaac
ctggacgactccattaatgatgagaggctgaaggaagttttctctacctatggcgtgatc
accagcgctaaggtgatgacagaaagtagccacagcaagggctttggctttgtgtgcttt
tcctctccagaagaggcaacgaaggccgtgacggagatgaacgggcgcatcgtgggcacg
aaaccgctctatgtggccctggcacagcgcaaggaggagcggaaggccatcttgaccaac
cagtataggcgacgcccctctcaccctgtcttgagctccttccagcagcctaccagctac
ctgctccctgctgtaccccagtctacagcccaggctgtgtactacagttctggctccata
actccaatgcaacctgaccccaggtggacagcccagccacatggacctccatctacctgc
cctccagctgcctctgtggtccagcctctaagcacgacgcagcatccctgtatccacctg
aggggtgccagccaggtctccagccaggtgcctcacacgcagagagtagtcaacattggt
acccagactacaggaccaggtggggagggatcctctatcccaggccagcttctcgtgcca
catagaggaacctcagctgtacacagtgcccatggggtccaggagtcggccgtgtatgtc
cctggccatcagcctctgactgtgtccatgctggccgctgcacccctacacgagcaaaag
cagatgattggggagcgtctctactccctcatccacgatgcctgcgccccactgactggc
aagatcacgggcatgctgctggagctggacaacctggagcttctgttattgctggagtcc
ccagagtccctccatgccaagatagaagaggcggtggcagtactgcaggtgcatcgagaa
atggagtcaacagataggaactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (9)   
   RefSeq(nuc) (3)   
   GenBank (3)   
   EMBL (3)   
Protein domain (9)   
   Pfam (9)   
All databases (64)   

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