KEGG   Mus musculus (house mouse): 50505
Entry
50505             CDS       T01002                                 
Symbol
Ercc4, Xpf
Name
(RefSeq) excision repair cross-complementing rodent repair deficiency, complementation group 4
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03420  Nucleotide excision repair
mmu03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    50505 (Ercc4)
   03460 Fanconi anemia pathway
    50505 (Ercc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mmu03032]
    50505 (Ercc4)
   03400 DNA repair and recombination proteins [BR:mmu03400]
    50505 (Ercc4)
DNA replication proteins [BR:mmu03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    50505 (Ercc4)
DNA repair and recombination proteins [BR:mmu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     50505 (Ercc4)
SSDB
Motif
Pfam: ERCC4 HHH_5
Other DBs
NCBI-GeneID: 50505
NCBI-ProteinID: NP_056584
MGI: 1354163
Ensembl: ENSMUSG00000022545
UniProt: Q9QZD4 Q3UEU6
Position
16:12927600..12969873
AA seq 917 aa
MEPGLSGERRSMAPLLEYERQQVLELLDSDGLVVCARGLGTDRLLYHFLRLHCHPACLVL
VLNTQPAEEEYFINQLKIEGVEHLPRRVTNEIASNSRYEVYTQGGIIFATSRILVVDFLT
GRIPSDLITGILVYRAHRIIESCQEAFILRLFRQKNKRGFIKAFTDNAVAFDTGFCHVER
VMRNLFVRKLYLWPRFHVAVNSFLEQHKPEVVEIHVSMTPAMLAIQTAILDILNACLKEL
KCHNPSLEVEDLSLENALGKPFDKTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLSQ
YDCVTFLNLLESLRATEKVFGQNSGWLFLDASTSMFVNARARVYRVPDVKLNKKAKTSEK
TSSPEVQETKKELVLESNPKWEALTDVLKEIEAENKESEALGGPGRVLICASDDRTCCQL
RDYLSAGAETFLLRLYRKTFEKDGKAEEVWVNVRKGDGPKRTTKSDKRPKAAPNKERASA
KRGAPLKRKKQELTLTQVLGSAEEPPEDKALEEDLCRQTSSSPEGCGVEIKRESFDLNVS
SDAAYGILKEPLTIIHPLLGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRP
GKPLRVYFLIYGGSTEEQRYLTALRKEKEAFEKLIREKASMVVPEEREGRDETNLDLARG
SAALDAPTDTRKAGGQEQNGTQSSIVVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILT
PELCVERKSVSDLIGSLHSGRLYSQCLAMSRYYRRPVLLIEFDPSKPFSLAPRGAFFQEM
SSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSETLP
ESDRYNPGPQDFVLKMPGVNAKNCRSLMNQVKNIAELATLSLERLTTILGHSGNAKQLHD
FLHTAYADLVSKGRVRK
NT seq 2754 nt   +upstreamnt  +downstreamnt
atggagccaggcctgtcgggcgaacggcggagtatggcgccgctgttggagtacgagagg
cagcaggtgctggaactgctcgacagcgacgggctggtggtgtgtgcccgcggactcggc
accgaccggctcctctaccatttcctgcggcttcactgccacccggcctgcctggtgctg
gtgctcaacacgcagccggccgaggaggaatattttatcaatcagttgaagatagaagga
gttgaacatctccctcgacgagtgacaaatgaaatcgcaagtaacagtcgctatgaagtc
tacacgcagggtggtattatatttgcaacaagccgaatactcgtggttgatttcttgaca
ggtagaataccttcagatttaataactggcatcctcgtgtacagggcacacagaatcatt
gagtcctgccaggaagccttcatcctgcgcctcttccgccagaaaaacaagcgcgggttc
atcaaagctttcaccgacaacgctgttgcctttgacactggcttttgtcacgtggaaaga
gtgatgcggaacctttttgtgaggaagctctacctgtggccaaggttccatgtagcagtc
aactcattcttggaacaacacaagcctgaagttgtagagattcacgtgtccatgactccc
gccatgcttgccattcagacggccatactagacatcttaaatgcatgtctgaaagaactg
aaatgtcacaacccgtcacttgaagtagaagatttgtcactagaaaacgctcttgggaag
ccattcgacaagacaatccgccattacttggaccctttgtggcatcagcttggagccaag
actaaatccttggtgcaggatttaaagatactaagaaccttactgcagtatctctctcag
tatgattgtgttacatttctgaatcttctggaatctctgagagcaacagagaaggtgttt
ggtcagaattcaggttggcttttcctggatgctagcacctccatgtttgtgaatgctcgt
gcccgagtttaccgagttccagatgtcaaactgaacaaaaaggccaaaacatcagaaaag
acgtcgagtccagaagttcaagaaacaaaaaaagaactggttctagagagcaatccaaag
tgggaggcgctgactgacgtcctgaaagaaatcgaagcagaaaataaggagagcgaagcc
cttggtggcccaggccgggtgctgatctgtgcaagcgatgaccgcacgtgctgccagctg
agagactacctgtccgccggagcagaaaccttcctgctgcgactttataggaaaactttt
gagaaggatggcaaagctgaagaagtgtgggtaaatgttagaaagggggacggcccgaag
agaactacaaaatctgacaaaagaccaaaagccgctccaaacaaggagcgtgcttccgcc
aaaaggggggcccctctcaaaaggaagaagcaagagctgactctgacgcaagttttgggg
tccgctgaggagccgccggaggacaaggctttggaggaagacctgtgcagacagaccagt
agtagcccagaaggctgcggggtagagattaagcgtgaatcatttgatttaaatgtgtcg
tctgatgcggcctatggcatcctgaaagagcccctgaccatcatccatccgcttctaggg
tgcagcgacccctatgccctgacgcgggtactgcacgaggtggagcccagatacgtggtt
ctgtatgatgcagagctcacctttgttcgccaactggagatctacagggctagcaggcct
gggaaacctctgagggtttactttcttatatacggaggctccacggaagagcagcgctac
ctgactgctctgcggaaagaaaaggaagcctttgaaaagctcataagagaaaaagctagc
atggttgtccccgaagaacgggaaggcagagatgagaccaacctggacctagcaagaggc
tcagcagccctggatgctcccacggacactcggaaagccggtggccaggagcagaatggc
acccagtccagcatcgtggtggacatgcgtgagtttcggagcgagctcccatctctgatc
catcggcggggtattgacatagagccagtgactctggaggtgggtgattacatcctgaca
cctgagctgtgtgtggagcgcaaaagtgtgagcgacctcattggctcgctgcacagtggc
cgcctgtacagccagtgcctagccatgtctcgctactaccggaggcctgtgctgctcatt
gagtttgacccgagcaagcccttctccctggcgccacgaggtgccttcttccaggagatg
agcagcagcgatgtgagctccaagcttacgctcctcaccttgcacttcccgcgtttgcgg
ctgctctggtgcccctcaccccacgccacagccgagctgtttgaggagctgaagcagaac
aagccacagcctgatgcggccacagccatggccatcaccgcagactcagagacactgcct
gagtcggacagatataaccccggcccccaagactttgtgctgaagatgcctggggtcaac
gccaagaactgtcgctccctgatgaaccaagtgaagaacatcgcagagctggccaccctg
tccctggaacgactcacaaccatcctggggcactcgggaaatgccaagcagctgcacgac
ttcctgcacactgcctatgcagacttggtgtccaaaggcagagtgagaaagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (5)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (26)   
   RefSeq(nuc) (2)   
   GenBank (12)   
   EMBL (12)   
Protein domain (2)   
   Pfam (2)   
All databases (60)   

Download RDF
DBGET integrated database retrieval system