KEGG   Mus musculus (house mouse): 50783
Entry
50783             CDS       T01002                                 
Symbol
Lsm4
Name
(RefSeq) LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03018  RNA degradation
mmu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    50783 (Lsm4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    50783 (Lsm4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    50783 (Lsm4)
   03041 Spliceosome [BR:mmu03041]
    50783 (Lsm4)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     50783 (Lsm4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     50783 (Lsm4)
Spliceosome [BR:mmu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    50783 (Lsm4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 50783
NCBI-ProteinID: NP_056631
MGI: 1354692
Ensembl: ENSMUSG00000031848
UniProt: Q9QXA5 Q9CY46
Position
8:71124663..71131402
AA seq 138 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVREEAAKGRGRGGPQQQKQQKGRGMGGAGRGVFGGRGRGGIP
GAGRGQPEKKPGRQAGKQ
NT seq 417 nt   +upstreamnt  +downstreamnt
atgcttcccttgtcgctgctgaagacagcgcagaatcaccccatgctggtggagctgaag
aatggggagacctacaacgggcatctggtgagctgtgacaactggatgaacatcaacctc
cgggaggtgatctgcacgtcgcgggatggtgacaagttctggaggatgcctgagtgctac
atccgtggcagcaccatcaagtacctgcgcatccctgatgagatcattgacatggtgcgg
gaggaggccgccaagggccgagggcgaggaggaccgcagcagcagaagcagcagaaaggc
cgaggcatgggcggcgctggccgaggtgtgtttggtggccggggccggggtggcatccca
ggtgcaggccgaggccagcccgagaagaagccagggcggcaggcaggcaaacagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (6)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (25)   
   RefSeq(nuc) (3)   
   GenBank (11)   
   EMBL (11)   
Protein domain (1)   
   Pfam (1)   
All databases (53)   

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