KEGG   Mus musculus (house mouse): 51796
Entry
51796             CDS       T01002                                 
Symbol
Srrm1, POP101, Srm160
Name
(RefSeq) serine/arginine repetitive matrix 1
  KO
K13171  serine/arginine repetitive matrix protein 1
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03013  Nucleocytoplasmic transport
mmu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    51796 (Srrm1)
   03015 mRNA surveillance pathway
    51796 (Srrm1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    51796 (Srrm1)
   03041 Spliceosome [BR:mmu03041]
    51796 (Srrm1)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     51796 (Srrm1)
Spliceosome [BR:mmu03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   SR-related proteins
    51796 (Srrm1)
SSDB
Motif
Pfam: PWI
Other DBs
NCBI-GeneID: 51796
NCBI-ProteinID: NP_058079
MGI: 1858303
Ensembl: ENSMUSG00000028809
UniProt: Q52KI8 E9PUK6
Position
4:complement(135047795..135080787)
AA seq 923 aa
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL
GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP
SAFLELKKEEIKQRQIEQEKLASLKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSP
SPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKSPELPEPSVRMKDSSVQEATS
TSDILKAPKPEPVPEPKEPSPEKNSKKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRH
RSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSS
SSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNR
TRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGSKMAAADSVQQR
RQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSP
RMQMGKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRT
PSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPP
KQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRR
GASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAK
KPPAPPSPVQSQSPSTNWSPAVPAKKAKSPTPSLSPARNSDQEGGGKKKKKKKDKKHKKD
KKHKKHKKHKKEKAVTIATPATAAPAAVSAATTTSAQEEPAAAPEPRKETESEAEDDNLD
DLERHLREKALRSMRKAQVSPQS
NT seq 2772 nt   +upstreamnt  +downstreamnt
atggacgcgggattcttccgcggaacaagtgcggagcaggataatcggttcagcaacaaa
cagaagaaactcctcaagcagctgaaatttgcagaatgcttagaaaaaaaggtggacatg
agcaaagtaaatttggaggttataaagccttggataaccaaaagagtaactgagatcctt
ggattcgaagatgatgttgtcattgagtttatattcaaccagctggaagtgaagaaccca
gattccaaaatgatgcaaatcaacctgactgggtttttgaatgggaagaatgctagagaa
ttcatgggagagctgtggcccctgctgttgagtgcacaagaaaatatcgccggaatccct
tctgctttcctagagttgaagaaggaagagataaagcagagacaaattgaacaagaaaaa
ttggcgtctctgaaaaaacaagatgaagataaagataagagggataaggaagaaaaggaa
agcagcagagagaagagggagcggtctcgcagcccaagaagacgcaaatccagatctcct
tcccctagaagacgatcttcccctgtcaggagagagagaaagcgcagtcactctcgatct
ccccgtcacagaaccaagagccggagcccttcccctgccccagaaaagaaggagaaatct
ccagagctcccagagccatccgtgaggatgaaggactcctcagtacaggaggccacctct
acaagtgacatcttgaaagctcccaagcctgagcctgtaccagagcccaaagaaccgtct
ccagaaaaaaattccaaaaaggaaaaggaaaagactcgaccaagatctcggtcacgatcc
aaatctcggtctcggacccgatctcgatcaccttctcatactagaccaagacggagacat
agatcccgatcaagatcatactctcctagaaggcggccaagcccaagacgacgaccatct
ccccgaagaagaactccaccaagacggatgcctcctccaccaaggcaccggaggagtagg
tctccagggagacgaaggaggcgttcttccgcatccctgtctggaagtagctcgtcgtcc
tcttcatctcgttcccggtcaccaccaaagaaacctcccaagaggacatccagccctcct
cggaaaacgcgtaggttatcaccttcagcaagtcctccacggcgaagacaccggccgtca
tctccagcaactccgccacccaaaactcgccattccccaactccccagcagtcaaaccgt
acaagaaaaagtcgtgtttctgtgtctccaggaagaacctccggtaaagtgacaaaacat
aaaggtactgagaaaagagagtcaccttctccagcacccaagcctagaaaagtggagctg
tctgagtctgaagaagacaaaggcagcaaaatggctgcagctgattctgtgcagcagaga
agacaataccgacggcagaaccagcagtcttcatctgactctggctcctcttccacctca
gaagatgagcggcccaagagatcccatgtaaagaacggtgaggtaggcaggcggcggaga
cattccccttctcggagtgcctctccatcacctcgaaagcgccagaaagagacttcccct
cggatgcagatgggaaagcgatggcagtcaccagtgactaaaagtagtagaaggaggaga
agtccctctccccctcctgccagaaggcgaaggtctccttctccagcccctccgccgcca
cctccccctcctcctcctcggcggcgcagatctcccaccccaccaccacgacgaaggacc
ccttctcctcccccacgccgccgctcaccgtctccaagaagatactctcctcccattcag
aggagatactctccttccccccctccaaagaggagaaccgcctcccccccgcccccgccc
aagcgaagggcatcaccatctccaccaccaaagcgccgggtctcccactctccacctcct
aaacaaagaagccccacagtcaccaagagacgctcgccctccttatcttcaaaacatagg
aaagggtcttccccaggccgatccacccgggaggcccgctcaccacaaccaaacaaacgg
cattcgccctcaccacggcctcgggctcctcagacctcaagccctccccctgtacgaaga
ggagcttcagcgtcaccccaaggaaggcagtccccatctccaagtactaggcctattagg
agagtctccaggaccccggagcccaaaaagataaaaaaggctgcctcaccaagccctcag
tccgtaagaagggtttcatcttccagatctgtctctggatctcctgagccagcagctaaa
aagccgccagcacctccctctcctgtgcagtctcagtcaccctccacaaactggtcacct
gcagtaccagccaaaaaggctaagagcccaacaccaagcctgtcccctgcccggaattct
gatcaagaaggaggtgggaagaaaaagaagaagaagaaggacaagaaacacaagaaggat
aagaaacacaagaagcacaaaaaacacaagaaggagaaggctgtgaccatagccacccca
gctactgcagcccctgcagctgtttctgctgccaccaccacatcagcacaggaagagcct
gcagcagcaccagagcccaggaaggagactgagagtgaagctgaagatgacaaccttgat
gacctagagaggcacctgcgggagaaggccctgcggtccatgcggaaggctcaagtgtcc
ccacagtcctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (311)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (302)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (35)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (32)   
DNA sequence (61)   
   RefSeq(nuc) (37)   
   GenBank (12)   
   EMBL (12)   
Protein domain (1)   
   Pfam (1)   
All databases (414)   

Download RDF
DBGET integrated database retrieval system