KEGG   Mus musculus (house mouse): 53817
Entry
53817             CDS       T01002                                 
Symbol
Ddx39b, 0610030D10Rik, Bat-1, Bat1, Bat1a, D17H6S81E, D17H6S81E-1, D6S81Eh
Name
(RefSeq) DEAD box helicase 39b
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03013  Nucleocytoplasmic transport
mmu03015  mRNA surveillance pathway
mmu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    53817 (Ddx39b)
  09122 Translation
   03013 Nucleocytoplasmic transport
    53817 (Ddx39b)
   03015 mRNA surveillance pathway
    53817 (Ddx39b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    53817 (Ddx39b)
   03041 Spliceosome [BR:mmu03041]
    53817 (Ddx39b)
Enzymes [BR:mmu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     53817 (Ddx39b)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     53817 (Ddx39b)
Spliceosome [BR:mmu03041]
 Complex C
  Other components
   EJC/TREX
    53817 (Ddx39b)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    53817 (Ddx39b)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 53817
NCBI-ProteinID: NP_001239386
MGI: 99240
Ensembl: ENSMUSG00000019432
UniProt: Q9Z1N5
Position
17:35460722..35472683
AA seq 428 aa
MAENDVDNELLDYEDDEVETAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq 1287 nt   +upstreamnt  +downstreamnt
atggcagagaacgatgtggacaatgagctcttggactacgaagacgacgaggtggagaca
gccgctggggcagatgggaccgaggctcccgccaagaaagacgtcaagggctcctacgtc
tccatccacagctccggcttccgagattttctactcaagccagagctgctccgggccatc
gttgactgtggctttgagcatccatcagaggtccagcatgagtgcatcccgcaggccatt
ctggggatggatgtcctgtgccaggccaagtcaggcatgggaaaaacagcagtgtttgtc
ctggccacactgcagcagctggagcccgttactgggcaggtgtctgtgctggtgatgtgt
cacactagggagctggcttttcagatcagcaaggaatatgagcgcttctctaagtacatg
ccgaatgtcaaggtggcagtgttttttggcggtctgtctatcaagaaggacgaagaggtg
ctgaagaagaactgcccacacatcgtcgtggggactcctggccgaattctagccctggct
cgaaataagagcctgaacctcaaacacattaaacactttattttggacgagtgtgacaag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgcccagtctgccgc
aagttcatgcaagatcctatggagatcttcgtggatgacgagaccaagttgacgctgcac
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgat
cttctcgatgtcctcgagttcaaccaggtggtgatctttgtgaagtccgtgcagcgctgc
atcgccctggcccagcttctagtggaacagaacttcccagccattgctatccatcgtgga
atgccccaggaggagaggctctctcggtatcagcagttcaaggattttcagcggaggatt
cttgtggctaccaacctgtttggccgaggcatggatattgagcgtgtgaacattgctttc
aactatgacatgccagaggactcggacacctacctgcacagggtggccagagcgggccgg
tttggcaccaagggcttggccatcacatttgtgtcagatgagaatgatgccaagatcctg
aatgacgttcaggaccgtttcgaggtcaacatcagcgagctgcccgatgagattgacatt
tcctcctacattgagcagacacggtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (55)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (47)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (48)   
   RefSeq(nuc) (2)   
   GenBank (23)   
   EMBL (23)   
Protein domain (4)   
   Pfam (4)   
All databases (119)   

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