KEGG   Mus musculus (house mouse): 53970
Entry
53970             CDS       T01002                                 
Symbol
Rfx5
Name
(RefSeq) regulatory factor X, 5 (influences HLA class II expression)
  KO
K08061  regulatory factor X 5
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04612  Antigen processing and presentation
mmu05152  Tuberculosis
mmu05340  Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09150 Organismal Systems
  09151 Immune system
   04612 Antigen processing and presentation
    53970 (Rfx5)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05152 Tuberculosis
    53970 (Rfx5)
  09163 Immune disease
   05340 Primary immunodeficiency
    53970 (Rfx5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mmu03000]
    53970 (Rfx5)
Transcription factors [BR:mmu03000]
 Eukaryotic type
  Other basic domains
   RF-X
    53970 (Rfx5)
SSDB
Motif
Pfam: RFX5_DNA_bdg RFX5_N RFX_DNA_binding Pox_D5
Other DBs
NCBI-GeneID: 53970
NCBI-ProteinID: NP_059091
MGI: 1858421
Ensembl: ENSMUSG00000005774
UniProt: Q9JL61
Position
3:94861355..94868685
AA seq 658 aa
MAEDKPDAKSPKTGARPQGGADAGEPTTLLQRLRGTISKAVQNKVEGILQEVQKFSDNDK
LYLYLQLPSGPSVGEKSSEPSLLSNEEYMYAYRWIRNHLEEHMDTCLPKQSVYDAYRKYC
ESLACCRPLSTANFGKIIREIFPDIKARRLGGRGQSKYCYSGIRRKTLVSMPPLPGLDLK
GSESPEMGPEVSPAPRDELVEAACALTCDWAERILKRSFSSIVQVARYLLQQHLISARSA
HAHVLKAGGLAEEDERAPRERSLCKSKNVVESLEGGGPKKPERPAQPPKEQEARAGTDLP
GRAERKKSVIDSSVPAASKPQVNALVARLPVLLPRAPRSLITPISGTLKVATLPLPTRVG
GPQTAVPIINMILPPVPTLSGAGPGPGPGLGPRFGPGPGLGPGPGPGLGAGLGPGLGPGL
GAGPGPGLGAGLGAGLGLGPGRVPPRAPILPRGAENREVGISSDPRPHDKGIKRTAEVPL
SEASGQDPPVKEMKHETQDTTVSEAKRKRGRPRKKPGGSGERNATPEKSAAIVNSPRSPR
LLWETWGSKRENNFIGRPEGPGPGGEAERETVLVQGQQDGAVSKGERSLSSQEAKEAEDK
IPPVTSKVSVIKGRIQKEALQLVKGEADAATQGNKGLKGRVLQSSLTPEHKDPKATPP
NT seq 1977 nt   +upstreamnt  +downstreamnt
atggcagaagataaacctgatgctaagagccccaagactggggcaaggccccaaggtggt
gctgacgctggagaacctaccaccctcctccaaaggctccgaggtaccatttccaaggcc
gtgcagaacaaagtagagggaattctgcaagaagtacagaaattctcggacaacgacaag
ctgtacctctaccttcagctcccatcggggcccagcgttggcgagaagagctcagagcca
agtctgctcagcaatgaggagtatatgtatgcctataggtggatccgcaaccacctggaa
gagcacatggatacctgcctgccaaagcagagcgtctatgatgcctatcgaaagtactgc
gagagcctcgcctgttgccgcccgctcagcacagccaacttcggtaaaatcatcagagag
atcttccctgacatcaaggcccgaagactcggtggccggggccagtccaaatattgctac
agtggcattcgaaggaagaccttggtatccatgccaccattgcctggactcgacttgaag
ggatctgaaagtccagaaatgggcccagaagtaagcccagcacctcgggatgaactggta
gaagcagcctgtgccctgacttgtgactgggcagagcggatcctgaagcggtccttcagt
tccatcgtccaggtcgcccgctacctcctgcagcagcatctcatctctgcccggtcggca
catgctcatgtgcttaaggccggggggcttgctgaagaggatgaaagagcccctcgagaa
cggtcattatgtaagtccaagaatgtcgtagaaagcctggaagggggaggccctaagaaa
ccagagagaccggcccagcctcctaaagagcaagaagcccgagctgggacagaccttcca
gggcgtgcagaacggaagaagagtgtaattgacagctcggttccagcagccagtaagcca
caagttaatgctcttgtggcccgactgcctgtgctgcttccaagagcaccacgatcactt
atcacacccatttcaggcactctgaaagtagctacgctgcctctacccactagggttgga
gggccccagacagctgtgcccatcatcaacatgatcttaccacctgttcctactttgtca
ggggctgggcctgggcctgggcctggccttgggcctaggtttgggccagggcctgggctt
gggcctgggccggggcctggtctgggggctggtctggggcctgggttagggcctgggctt
ggagctggaccagggcccgggcttggagctgggcttggggctggcctagggcttgggcct
gggcgagttccacctagagcacccattctgcctcgaggtgcagagaacagggaggtaggc
ataagtagtgatccaagacctcatgacaagggtatcaaaaggacagctgaagtgcctctg
agtgaggccagtgggcaggacccaccagttaaagaaatgaagcacgaaacacaggatact
acagtaagtgaagcaaaaaggaagcgaggacgccctcgaaagaagccaggagggagtggg
gaaagaaacgctactcctgagaagtctgcagctattgtgaactctccccgatccccaagg
ctactctgggagacatggggctcaaaaagagaaaacaacttcattgggagaccagaagga
ccagggccagggggtgaggctgagcgggaaacagtgcttgtgcaaggtcagcaagatggt
gctgtttccaaaggagaaaggagcttgagttcccaggaagccaaagaagcagaagataaa
attcctcctgtcacttcaaaagtgagtgttatcaagggcagaattcaaaaagaggctctt
cagttggtaaagggagaggctgatgctgcaacacagggcaacaaagggttaaagggtcgt
gtacttcaaagttccctaacccctgagcataaagaccccaaagcaacacccccatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (19)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (17)   
DNA sequence (47)   
   RefSeq(nuc) (17)   
   GenBank (15)   
   EMBL (15)   
Protein domain (4)   
   Pfam (4)   
All databases (107)   

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