KEGG   Mus musculus (house mouse): 54451
Entry
54451             CDS       T01002                                 
Symbol
Cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor 3
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    54451 (Cpsf3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmu03021]
    54451 (Cpsf3)
   03019 Messenger RNA biogenesis [BR:mmu03019]
    54451 (Cpsf3)
Transcription machinery [BR:mmu03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     54451 (Cpsf3)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     54451 (Cpsf3)
    U7-dependent histone pre-mRNA processing factors
     54451 (Cpsf3)
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B_6 Lactamase_B RMMBL Lactamase_B_2 Lactamase_B_3 Beta_lactamase3
Other DBs
NCBI-GeneID: 54451
NCBI-ProteinID: NP_061283
MGI: 1859328
Ensembl: ENSMUSG00000054309
UniProt: Q9QXK7 Q3UDS1
Position
12:21336298..21365057
AA seq 684 aa
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVE
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR
VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFYLLYYQLQKLTGDVEEL
EIQEKPALKVFKSITVVQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQK
VSKKLEMHVYSKRLEVMLQDIFGEDCVSVKDDSVLSVTVDGKTANINLETRAVECEEGSE
DDESLREMVELAAQRLYEALTPVH
NT seq 2055 nt   +upstreamnt  +downstreamnt
atgtctgcgattcctgcagaggagagcgaccagctgctgatccgaccccttggtgctggg
caagaagtgggaagatcatgtattattctggagttcaaaggaaggaaaatcatgctggac
tgtgggatccaccctggcctggaaggaatggatgcccttccttacattgaccttatcgac
ccagctgagatcgaccttctgttgatcagtcatttccatttggatcactgtggagccctg
ccctggttccttcagaagacaagtttcaaaggacggacatttatgacccacgccacaaaa
gctatttatagatggcttctctcagactatgtcaaagtcagcaacatatcggcagatgac
atgctgtacactgagacagacttggaagaaagcatggacaaaatcgaaaccatcaatttt
catgaagttaaggaagttgcaggaatcaagttctggtgttaccatgccggccacgtcctg
ggagcagccatgtttatgatagagatcgctggtgtgaagcttttgtatacaggtgatttc
tcaagacaagaagacagacacctaatggctgctgagattcctaatattaagccagacatc
ctgatcattgagtctacgtatgggacccatatccatgagaagcgtgaagagcgagaagca
agattctgcaacactgtgcacgacattgtcaacagagggggcagagggctcattcctgtc
tttgctctcggaagagctcaggagctgctcctgattctagatgagtactggcagaaccac
ccggagctgcatgacatacccatttactacgcatcgtctctggccaagaagtgcatggcc
gtgtaccagacctacgtgaatgccatgaacgacaagatccggaagcagatcaacatcaac
aacccctttgttttcaagcacatcagcaacctcaagagcatggatcactttgatgacatt
ggccccagtgttgtgatggcctcaccaggcatgattcaaaacggcttatccagagagctg
tttgaaagctggtgtacagataagaggaatggcgtcatcatcgcggggtactgtgtcgaa
gggacacttgccaagcacatcatgtctgaacctgaagaaatcacgaccatgtctggacag
aagttgccactgaaaatgtcggttgattacatttctttctctgctcacacagattaccag
caaaccagtgaatttattcgtgctctgaagccacctcacgtgattttagtccatggggaa
cagaatgaaatggccaggctgaaagcagcgctgatccgagaatatgaagataatgatgaa
gttcacatcgaggttcacaatcctcggaacacagaggccgtgaccttaaacttcagggga
gagaagctcgccaaggtcatgggctttttggcagacaagaaaccagaacagggccagcgg
gtctctggaattcttgttaaaagaaactttaattaccacatactctctccctgtgacctc
tccaattacactgacctggccatgagcactgtgaaacagacccaggccatcccgtacacc
gggcccttttacctgctctactaccagctccagaaattgacgggtgatgtagaagaatta
gaaattcaagaaaagcctgctctgaaggtgttcaaaagcatcactgtggtgcaggagccg
ggcatggtggttctggagtggctggcgaacccctctaacgacatgtatgcagacacagtg
accaccgtgatattggaagttcagtcaaatccaaagataaggaaaggtgcagtacagaag
gtctctaagaagctagagatgcacgtttacagcaagaggctggaggtcatgctccaggac
atatttggagaagactgtgtcagtgtgaaagatgactccgtcctcagtgtcacagtggac
gggaaaacagcaaatattaatctggagactcgggctgtagaatgtgaagaaggaagtgaa
gatgatgaatccctccgagaaatggtggaactggccgcccagagactgtacgaggctctg
acgccggtgcactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (8)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (54)   
   RefSeq(nuc) (6)   
   GenBank (24)   
   EMBL (24)   
Protein domain (8)   
   Pfam (8)   
All databases (91)   

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