Entry |
|
Symbol |
Cacna1f, A930034B14, Cav1.4, Sfc17, nerg1, nob2
|
Name |
(RefSeq) calcium channel, voltage-dependent, alpha 1F subunit
|
KO |
K04853 | voltage-dependent calcium channel L type alpha-1F |
|
Organism |
mmu Mus musculus (house mouse)
|
Pathway |
mmu04261 | Adrenergic signaling in cardiomyocytes |
mmu04270 | Vascular smooth muscle contraction |
mmu04723 | Retrograde endocannabinoid signaling |
mmu04925 | Aldosterone synthesis and secretion |
mmu04927 | Cortisol synthesis and secretion |
mmu04935 | Growth hormone synthesis, secretion and action |
mmu05022 | Pathways of neurodegeneration - multiple diseases |
mmu05207 | Chemical carcinogenesis - receptor activation |
mmu05412 | Arrhythmogenic right ventricular cardiomyopathy |
|
Brite |
KEGG Orthology (KO) [BR:mmu00001]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
54652 (Cacna1f)
04020 Calcium signaling pathway
54652 (Cacna1f)
04024 cAMP signaling pathway
54652 (Cacna1f)
04022 cGMP-PKG signaling pathway
54652 (Cacna1f)
09150 Organismal Systems
09152 Endocrine system
04911 Insulin secretion
54652 (Cacna1f)
04929 GnRH secretion
54652 (Cacna1f)
04912 GnRH signaling pathway
54652 (Cacna1f)
04921 Oxytocin signaling pathway
54652 (Cacna1f)
04935 Growth hormone synthesis, secretion and action
54652 (Cacna1f)
04924 Renin secretion
54652 (Cacna1f)
04925 Aldosterone synthesis and secretion
54652 (Cacna1f)
04927 Cortisol synthesis and secretion
54652 (Cacna1f)
09153 Circulatory system
04260 Cardiac muscle contraction
54652 (Cacna1f)
04261 Adrenergic signaling in cardiomyocytes
54652 (Cacna1f)
04270 Vascular smooth muscle contraction
54652 (Cacna1f)
09156 Nervous system
04727 GABAergic synapse
54652 (Cacna1f)
04725 Cholinergic synapse
54652 (Cacna1f)
04726 Serotonergic synapse
54652 (Cacna1f)
04723 Retrograde endocannabinoid signaling
54652 (Cacna1f)
09160 Human Diseases
09161 Cancer: overview
05207 Chemical carcinogenesis - receptor activation
54652 (Cacna1f)
09164 Neurodegenerative disease
05010 Alzheimer disease
54652 (Cacna1f)
05020 Prion disease
54652 (Cacna1f)
05022 Pathways of neurodegeneration - multiple diseases
54652 (Cacna1f)
09166 Cardiovascular disease
05410 Hypertrophic cardiomyopathy
54652 (Cacna1f)
05412 Arrhythmogenic right ventricular cardiomyopathy
54652 (Cacna1f)
05414 Dilated cardiomyopathy
54652 (Cacna1f)
09167 Endocrine and metabolic disease
04934 Cushing syndrome
54652 (Cacna1f)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:mmu04040]
54652 (Cacna1f)
Ion channels [BR:mmu04040]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
54652 (Cacna1f)
|
SSDB |
|
Motif |
|
Other DBs |
|
Position |
X:7473342..7501435
|
AA seq |
1984 aa
MSESEVGKDTTPEPSPANGTGPGPEWGLCPGPPTVGTDTSGASGLGTPRRRTQHNKHKTV
AVASAQRSPRALFCLTLTNPIRRSCISIVEWKPFDILILLTIFANCVALGVYIPFPEDDS
NTANHNLEQVEYVFLVIFTVETVLKIVAYGLVLHPSAYIRNGWNLLDFIIVVVGLFSVLL
EQGPGRPGDAPHTGGKPGGFDVKALRAFRVLRPLRLVSGVPSLHIVLNSIMKALVPLLHI
ALLVLFVIIIYAIIGLELFLGRMHKTCYFLGSDMEAEEDPSPCASSGSGRSCTLNHTECR
GRWPGPNGGITNFDNFFFAMLTVFQCITMEGWTDVLYWMQDAMGYELPWVYFVSLVIFGS
FFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQMEEDLRGYLDWITQAEELDLHDPS
VDGNLASLAEEGRAGHRPQLSELTNRRRGRLRWFSHSTRSTHSTSSHASLPASDTGSMTD
TPGDEDEEEGTMASCTRCLNKIMKTRICRHFRRANRGLRARCRRAVKSNACYWAVLLLVF
LNTLTIASEHHGQPLWLTQTQEYANKVLLCLFTVEMLLKLYGLGPSVYVASFFNRFDCFV
VCGGILETTLVEVGAMQPLGISVLRCVRLLRIFKVTRHWASLSNLVASLLNSMKSIASLL
LLLFLFIIIFSLLGMQLFGGKFNFDQTHTKRSTFDTFPQALLTVFQILTGEDWNVVMYDG
IMAYGGPFFPGMLVCVYFIILFICGNYILLNVFLAIAVDNLASGDAGTAKDKGREKSSEG
NPPKENKVLVPGGENEDAKGARSEGAAPGMEEEEEEEEEEEEEEEEENGAGHVELLQEVV
PKEKVVPIPEGSAFFCLSQTNPLRKACHTLIHHHIFTSLILVFIILSSVSLAAEDPIRAH
SFRNHILGYFDYAFTSIFTVEILLKMTVFGAFLHRGSFCRSWFNLLDLLVVSVSLISFGI
HSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACI
GVQLFKGKFYSCTDEAKHTLKECKGSFLIYPDGDVSRPLVRERLWVNSDFNFDNVLSAMM
ALFTVSTFEGWPALLYKAIDANAEDEGPIYNYHVEISVFFIVYIIIIAFFMMNIFVGFVI
ITFRAQGEQEYQNCELDKNQRQCVEYALKAQPLRRYIPKNPHQYRVWATVNSAAFEYLMF
LLILLNTVALAMQHYEQTAPFNYAMDILNMVFTGLFTIEMVLKIIAFKPKHYFADAWNTF
DALIVVGSVVDIAVTEVNNGGHLGESSEDSSRISITFFRLFRVMRLVKLLSKGEGIRTLL
WTFIKSFQALPYVALLIAMIFFIYAVIGMQMFGKVALQDGTQINRNNNFQTFPQAVLLLF
RCATGEAWQEIMLASLPGNRCDPESDFGPGEEFTCGSSFAIVYFISFFMLCAFLIINLFV
AVIMDNFDYLTRDWSILGPHHLDEFKRIWSEYDPGAKGRIKHLDVVALLRRIQPPLGFGK
LCPHRVACKRLVAMNVPLNSDGTVTFNATLFALVRTSLKIKTEGNLDQANQELRMVIKKI
WKRIKQKLLDEVIPPPDEEEVTVGKFYATFLIQDYFRKFRRRKEKGLLGREAPTSTSSAL
QAGLRSLQDLGPEIRQALTYDTEEEEEEEEAVGQEAEEEEAENNPEPYKDSIDSQPQSRW
NSRISVSLPVKEKLPDSLSTGPSDDDGLAPNSRQPSVIQAGSQPHRRSSGVFMFTIPEEG
SIQLKGTQGQDNQNEEQEVPDWTPDLDEQAGTPSNPVLLPPHWSQQHVNGHHVPRRRLLP
PTPAGRKPSFTIQCLQRQGSCEDLPIPGTYHRGRTSGPSRAQGSWAAPPQKGRLLYAPLL
LVEESTVGEGYLGKLGGPLRTFTCLQVPGAHPNPSHRKRGSADSLVEAVLISEGLGLFAQ
DPRFVALAKQEIADACHLTLDEMDSAASDLLAQRTTSLYSDEESILSRFDEEDLGDEMAC
VHAL |
NT seq |
5955 nt +upstreamnt +downstreamnt
atgtcggaatctgaagtcgggaaagatacaaccccagagcccagtccagccaatgggact
ggccctggccctgaatgggggctctgtcctgggcctccaactgtggggactgataccagc
ggggcgtcaggcctggggaccccaagaagaaggacccagcacaacaaacacaagactgtg
gcggtggccagtgctcagagatcacctcgagcgctcttctgcctcacccttactaatccc
attcgtcggtcctgcatcagcattgtagagtggaagccttttgatattctcatcctcctg
acaatctttgccaactgcgtggcattgggggtatatatccccttccctgaggacgactcc
aacactgctaaccacaacttggaacaggtagaatacgtgttcctggtgattttcaccgtg
gagacagtgctcaagatcgtagcctatgggctggtgctccatcccagcgcctatattcgc
aatggctggaacctgctcgacttcatcatcgtcgtggtcgggctgttcagcgtgctgctg
gaacaaggacctgggcggccaggagatgccccgcatactggaggaaagccaggaggcttc
gatgtaaaggcactgcgggcatttagggtgctacgacctctaaggctagtgtctggggtc
ccgagtctgcacatagtgctcaattccatcatgaaggcgcttgtgccgctgctgcacatt
gccctgttggtgctcttcgtcattatcatttacgccatcatcggactcgagctattcctc
ggacgaatgcacaagacatgctacttcctgggatctgatatggaagcagaggaggaccca
tcaccttgtgcatcttctggctctgggcgttcatgcacactgaaccataccgagtgccgc
gggcgctggccaggacccaacggtggcatcacgaacttcgacaattttttctttgccatg
ctaactgtgttccagtgtattaccatggaaggctggacagacgtcctctactggatgcag
gatgccatggggtatgagctgccttgggtgtactttgtgagccttgtcatctttgggtcc
ttctttgtcctcaaccttgtgcttggagtcctaagcggggagttctccaaggaaagagaa
aaggcaaaagcacgaggtgactttcagaagcttcgggagaagcagcagatggaagaagac
cttcggggctacctggactggatcacacaggctgaggagttagaccttcatgacccctca
gtagacggcaacttggcttctcttgctgaagagggacgggcgggccatcggccacaactg
tcagagctgaccaataggaggcgcggacggctgcgatggttcagccactctactcgctcc
acacactccaccagcagccacgccagcctcccagccagtgacactggctccatgacagac
acccctggagatgaggatgaagaagaggggaccatggctagctgtacacgctgcctaaac
aagattatgaaaacaaggatctgccgccacttccgccgagccaaccggggtctccgtgca
cgctgccgccgggccgtcaagtccaacgcctgctactgggctgtactgttgctcgtcttc
ctcaacacgttgaccatagcttcagagcaccatgggcagcctttgtggctcacccagacc
caagagtatgccaacaaagttctgctctgcctcttcactgtggagatgctcctcaaactg
tacggcctgggcccctctgtctacgttgcctcctttttcaaccgctttgactgcttcgtg
gtctgtgggggcatcctagaaaccactttggtggaggtgggggccatgcagcctcttggc
atctcagtgctccgatgtgtacgtctcctcaggatcttcaaggtcaccaggcactgggca
tccctgagcaatctggtggcatctttgctcaattccatgaagtccatcgcctccttgctg
cttctcctctttctcttcatcatcatcttctccctgcttggcatgcagctgtttgggggc
aagttcaactttgaccagacccacaccaagaggagcacctttgataccttcccccaagcc
ctcctcactgtctttcagatcctgactggtgaggattggaacgttgtcatgtatgatggt
atcatggcctacggtgggcccttcttcccagggatgctggtgtgtgtttatttcatcatc
ctcttcatctgtggcaactacatcctgctgaacgtgtttcttgccattgccgtggataac
ctagccagcggggatgcaggcactgccaaagacaagggcagagagaagagcagtgaagga
aaccctccaaaggagaacaaagtattggtgcctggtggagagaatgaggacgcaaagggt
gcaagaagtgaaggagcagcaccaggcatggaggaggaggaggaggaggaagaagaagaa
gaggaggaggaggaagaggaaaatggtgcaggacatgtggaactcttgcaggaagtagta
cccaaggagaaggtggtacccatccctgaaggcagtgccttcttctgccttagccaaacc
aacccgcttcggaaggcctgccacacactcatacatcaccatatcttcaccagtctcatc
ctagtgttcatcatcctcagtagtgtgtccctggctgctgaggaccccatccgagctcac
tccttccgaaaccatattctgggatattttgattatgccttcacctccatattcactgtg
gagattctactcaagatgacagtgtttggggccttcctgcaccgaggctctttctgccgt
agctggttcaatctgttggatctccttgtggtcagtgtgtccctcatctccttcggcatc
cactccagtgccatctcagttgtgaagattctccgagtcctccgagtcctgcggcctctc
cgagccatcaacagagccaagggactcaagcatgtggtgcagtgtgtgttcgtggccatc
cggaccatcggaaacatcatgattgtcaccaccctcttgcagttcatgttcgcctgcatt
ggtgttcagctgttcaagggaaaattctacagttgcactgatgaggccaaacacaccctg
aaagaatgcaagggctccttcctcatctaccctgatggagatgtgtcacgacctttggtc
cgggagcggctctgggtcaacagtgattttaactttgacaacgtcctttcagccatgatg
gccctgttcactgtctctacctttgaaggctggcctgcgctactatacaaggccatagat
gcaaacgcagaagatgagggccctatctacaattaccatgtggagatatcagtattcttc
attgtctacatcatcatcatcgccttcttcatgatgaacatctttgtgggctttgttatc
atcacattccgtgcccagggagagcaggagtaccaaaactgtgaactggacaagaaccag
cgccagtgtgtggaatatgccctcaaagctcagccactccgccgatacatccctaagaat
cctcatcagtaccgcgtgtgggccactgtgaactctgctgcctttgagtacctcatgttt
ctgctcatcctgctcaacacggtggccctagccatgcagcactatgaacagactgctccc
tttaactatgccatggacatcctcaacatggtcttcactggcctcttcaccattgagatg
gtgctcaaaatcatcgcctttaaacccaagcattactttgcagatgcctggaatacgttt
gatgctctcattgtagtgggcagtgtagtcgacatcgccgtcacagaagtcaataacgga
ggccatcttggcgagagttcagaggacagctcccgcatatctatcacgttctttcgcctc
ttccgagtcatgaggctggtcaagcttctgagtaagggtgaggggatccgcacactgctc
tggacattcatcaagtctttccaggccttgccctatgtggcacttctcatagcaatgata
ttcttcatctatgcagtcattggcatgcagatgtttggcaaggtggctcttcaggacggc
acgcagataaatcgaaacaacaatttccagacctttccgcaggctgtgctgcttctgttc
aggtgtgccactggtgaggcctggcaagagataatgctagccagccttccaggaaatcga
tgtgaccctgagtctgactttggcccaggcgaggaatttacctgtggtagcagttttgcc
atcgtctacttcatcagcttctttatgctctgtgccttcctgattataaatctctttgtg
gctgtaatcatggataactttgattacctaaccagagattggtctatcctgggaccccac
caccttgatgaattcaagaggatctggtctgaatatgaccccggagccaagggccgcatc
aagcacttggatgtggttgccctgctgagacgcatccagcccccattgggatttggaaag
ctatgcccacaccgagtggcctgcaagagactcgtggcaatgaatgtgcccctcaactca
gatggaacagtgacattcaacgctacactctttgccctggtgcggacatccctgaagatc
aagacagaagggaacctggatcaagccaaccaggagcttcggatggtcatcaaaaagatc
tggaagcggataaagcagaaattgttggatgaggtcatccctcctcccgatgaggaggag
gtcactgtgggaaaattctatgccacattcctgatccaagattatttccgaaaattccgg
agaaggaaagaaaaggggctactaggaagagaggccccaacaagcacatcctctgccctc
caggctggtctaaggagcctgcaggacttgggtcctgagatccgtcaagccctcacctat
gacactgaggaagaagaggaagaggaagaggcagtgggtcaggaggctgaggaagaggaa
gctgagaacaacccagaaccatacaaagactccatagactcccagccccaatctcgatgg
aactctaggatttcggtgtctctacctgttaaggagaaacttccagattctctctcaact
gggccgagtgatgatgatgggctggctcccaactccaggcagcccagtgtgatacaggct
ggctcccaaccacacaggagaagctctggggttttcatgttcactatcccggaagaagga
agtattcagctcaagggaactcaagggcaggacaatcagaatgaggaacaggaagtccct
gactggactcctgacctggatgagcaggccgggactccttcgaacccagtccttttacca
cctcactggtcccagcaacacgtaaacgggcaccatgtgccacgccgacgtttgctgccc
cccacgcctgcaggtcggaagccctccttcaccatccagtgtctgcaacgccagggcagt
tgtgaagatttacctatcccaggcacctaccatcgtggacggacctcaggaccaagcagg
gctcagggttcctgggcagcccctcctcagaagggtcgactgctatatgcccccctgttg
ttggtggaggaatctacagtgggtgaaggataccttggcaaacttggcggcccactgcgt
accttcacctgtctgcaagtgcctggagctcatccgaatcccagccaccgcaagaggggc
agtgctgacagtttggtggaggctgtgctcatctccgaaggcctaggtctctttgcccaa
gacccacgatttgtggccctggccaagcaggagattgcagatgcatgtcacctgaccctg
gatgagatggacagtgctgccagtgacctgctggcacagagaaccacctccctttacagt
gatgaggagtctattctttcccgctttgatgaagaggacctgggagatgagatggcctgt
gtccatgccctctaa |