KEGG   Mus musculus (house mouse): 55983
Entry
55983             CDS       T01002                                 
Symbol
Pdzrn3, 1110020C07Rik, LNX3, SEMACAP3, Semcap3
Name
(RefSeq) PDZ domain containing RING finger 3
  KO
K15682  ligand of Numb protein X 3/4 [EC:2.3.2.27]
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mmu04121]
    55983 (Pdzrn3)
Enzymes [BR:mmu01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     55983 (Pdzrn3)
Ubiquitin system [BR:mmu04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Ligand of Numb proteins
    55983 (Pdzrn3)
SSDB
Motif
Pfam: PDZ PDZ_6 PDZ_2 zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 Sina_ZnF zf-TRAF zf-C3HC4_4 zf-RING_5 TRAF3_RING Prok-RING_4 Tricorn_PDZ zf-rbx1 zf-RING_6
Other DBs
NCBI-GeneID: 55983
NCBI-ProteinID: NP_061372
MGI: 1933157
Ensembl: ENSMUSG00000035357
UniProt: Q69ZS0 Q3UPS8
Position
6:complement(101126568..101354858)
AA seq 1063 aa
MGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRL
SAKELNHVLPLKRLILKLDIKCAHAARGCGRVVKLQDLPEHLERCDFAPARCRHAGCGQL
LLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNGALQARLGAL
HKALKKEALRAGKREKSLVAQLAAAQLELQMTALRYQKKFTEYSARLDSLSRCVAAPPGG
KGEETKSLTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDSGPAAKEGGLQI
HDRIIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPASESQLVDTGTQT
DITFEHIMALTKMSSPSPPVLDPYLLPEEHPASHDYYDPNDYMGDIHQDMDREELELEEV
GLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN
REEAVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SVLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQENNGEDATASANPL
AGQRKLTCSQDTLGSGDLPFSNESFISADCTDVDYLGIPEDECERFRELLELKCQVQSAS
PYSLYYPSSPLDAAGKSDPESVDKELELLNEELRSIELECLSIVRAHKMQQLKEQYRESW
MLHHSGFRNYNTSVDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSL
RRVAEGSSEGATANIEAYRPSPKNLLAITEDPEVSTPSYNPSAKELDPSQALEIKERRGS
DGSRSPTASPKLGNAYLPSYHHSPYKHAHIPAHAQHYQSYMHLIQQKSAVEYAQSQMSLV
SMCKDLNSSNSVEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGLTTDDDA
MSEMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQASDDRKEMNILELSHK
KMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq 3192 nt   +upstreamnt  +downstreamnt
atgggtttcgagttggatcgcttcgacggcgacgtggaccctgatctgaagtgcgccttg
tgccacaaggtcctggaggacccgctgaccaccccgtgcggccacgtattctgcgccggc
tgcgtgctgccctgggtagtgcaggagggcagctgccccgcgcgttgtcgcggtcgccta
tcggccaaggagctcaaccacgtcctgcccctcaagcgtctcatcctcaagttggacatc
aagtgcgcgcacgcggcgcggggctgcggccgggtggtcaagttgcaggacttgcccgag
cacctggagcgctgcgacttcgcgcccgcgcgctgccgccacgcgggctgcggccagctg
ctgctgcgacgcgacgtggaggcccacatgcgcgacgcgtgcgacgcgcggcccgtgggt
cgctgccaggagggctgcgggctgccgctgacgcacggcgagcagcgggcgggcggccac
tgctgcgcgcgggctctgcgggcgcacaacggagcgctgcaggcccgcctgggcgcgctg
cacaaggcgctcaagaaggaggcgctgcgggccggcaagcgcgagaagtcgctggtggcg
cagctggccgccgcgcagctcgaactgcagatgaccgcgctgcgctaccagaagaagttc
accgagtacagcgcgcgcctcgactcgctcagccgctgcgtggccgcgccgccaggcggc
aagggagaagagaccaaaagcctgactcttgtcctgcatcgggactctggctccctggga
ttcaatatcattggcggccgaccctgtgtggacaatcaagatggatcctccagtgaagga
atctttgtatccaaaatagttgacagcgggcctgctgccaaggaaggaggcctgcaaatt
catgacaggattattgaggtcaacggcaaagacttatcccgagcaactcatgaccaggct
gtggaagctttcaagacagccaaggagcccattgtggtgcaggtgttgaggaggacacct
cgaaccaagatgttcacgcctgcctcagagtcgcagctggtagacacgggcacccaaacc
gacatcacctttgagcacatcatggccctgacaaagatgtcttctcccagcccacctgtg
ctagacccctacctgctgcctgaagagcatcccgcatcccatgactactatgatcccaat
gactacatgggggatatccatcaggacatggacagagaagagctggagctggaagaagtg
ggcctctacaggatgaacagccaggacaagctgggtctcactgtgtgctaccggacggat
gacgaagatgacattgggatatatataagtgagattgaccctaacagcattgcagccaag
gatggacggatccgtgaaggagatcgcatcatccagattaatggcatcgaagtacagaac
cgtgaagaggccgtggcgcttctaaccagtgaagaaaacaagaacttttcattgctgatt
gcaaggcctgagctccagctggatgagggctggatggacgacgacaggaacgacttcctg
gatgacttacacatggacatgctggaggaacagcatcaccaggccatgcagttcaccgcc
agtgtgctccagcagaagaagcatgaggaagacggtgggaccacagacacagccaccatc
ttatccaaccagcacgagaaagacagtggtgtcgggcgaacggatgagagcacccgcaat
gatgagagctcagaacaggagaataacggtgaagatgctacggcatccgccaacccgctg
gcaggccagaggaagctgacctgtagccaggacaccctgggcagtggcgacctgcctttc
agcaatgagtccttcatctctgcggactgtaccgatgtggactacctgggcatcccagag
gatgagtgcgagcgttttcgcgaactgctggagctcaagtgccaagtgcagagcgccagc
ccctacagcctgtactaccctagcagcccactggatgctgctggcaagagtgaccccgag
agcgtggacaaggagctggagctactcaatgaggagttgcgcagcatcgagctggagtgc
ctgagcatcgtgcgcgcgcacaagatgcaacagctcaaggaacagtaccgtgagtcctgg
atgctgcaccacagtggcttccgcaactacaacaccagtgtggacgtgcgccgccatgag
ctctcggacatcactgagctgccggagaagtcagacaaggatagttcaagcgcctacaac
acgggggagagctgcagaagtaccccactcaccctggagatctctccggacaactccctg
cggagagtagccgagggcagtagtgaaggggccacagctaacatcgaagcttacaggcca
tcccccaagaatctgctcgccatcactgaggaccctgaagtaagcaccccaagctataac
cctagtgccaaagagctggaccccagccaggctttggagatcaaagaacgccgaggtagc
gatggcagcaggagccccaccgccagcccaaagctgggcaatgcctacctgccctcatac
caccactccccctacaaacacgcgcacatcccagctcacgcgcaacactaccagagctac
atgcacctgatccagcagaagtcagcagtggagtatgcgcagagccagatgagcctggtg
agcatgtgcaaggacttgaactcttctaactctgtggaacccaggatggaatggaaagtg
aagatccgcagtgacgggacgcgctacatcaccaagaggccggtgcgtgacaggctgctg
cgggagcgtgcgctgaagatccgcgaggagcgcagtggcctgaccacggatgatgacgcc
atgagtgagatgaagatggggcgctactggagcaaggaggagcgcaagcaacatctggtg
aaggccaaggagcagaggcggaggcgcgagtttatgatgcagagcaggctggattgtctg
aaggagcagcaggcctccgacgacaggaaggagatgaacatcctggaactgagccacaaa
aagatgatgaagaagaggaacaaaaagatctttgacaattggatgactatccaagaactc
ttaacccacggcacaaaatcgccagacggcactagggtatacaattccttcctgtcggtg
actactgtataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (22)   
   RefSeq(nuc) (2)   
   GenBank (10)   
   EMBL (10)   
Protein domain (17)   
   Pfam (17)   
All databases (73)   

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