KEGG   Mus musculus (house mouse): 56422
Entry
56422             CDS       T01002                                 
Symbol
Hbs1l, 2810035F15Rik, eRFS
Name
(RefSeq) Hbs1-like (S. cerevisiae)
  KO
K14416  elongation factor 1 alpha-like protein
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03015  mRNA surveillance pathway
mmu05134  Legionellosis
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    56422 (Hbs1l)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05134 Legionellosis
    56422 (Hbs1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    56422 (Hbs1l)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     56422 (Hbs1l)
SSDB
Motif
Pfam: GTP_EFTU GTP_EFTU_D3 HBS1_N GTP_EFTU_D2 MMR_HSR1 AAA_22 AAA_29
Other DBs
NCBI-GeneID: 56422
NCBI-ProteinID: NP_062676
MGI: 1891704
Ensembl: ENSMUSG00000019977
UniProt: Q69ZS7
Structure
Position
10:21171876..21244788
AA seq 682 aa
MARHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPSTAAQFIYSRRDNPEEEYGYEDLRES
SNSLLNHQLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQDG
VQPWKEKSERAVCAGQPSKGKSVISRSSQSESEIVPKVAKMTVSGKKQTMGFEVPGLTSE
ENGLSVRAPHKGPPGDDVSVASPNIPETGTPKSALPPPSLQTSEELGSTPTPVRKSGKLR
QQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKA
GKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQA
DVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEIT
GKLGHFLKQAGFKESDVAFIPTSGLSGENLTARSQSSDLTTWYKGMCLLEQIDSFKPPQR
SIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVD
WAAAGDHVNLTLVGMDIIKINVGCIFCGPKEPIKACTRFRARILVFNIEVPITKGFPVLL
HYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKEL
GRFMLRYGGSTVAAGVVTEIKE
NT seq 2049 nt   +upstreamnt  +downstreamnt
atggcccggcatcggaacgtccggggatataactacgatgaagattttgaagatgatgat
ctgtatgggcagtctgtggaggatgactactgtatctcaccatcaacagccgctcagttc
atttactcacgccgtgacaaccctgaagaagaatatggctatgaagatctgagagagtct
tctaattctcttttgaatcaccaattaagtgaaattgaccaagctcgcctgtattcatgc
cttgatcacatgagagaggtactgggggacgctgtgcctgatgacatactgactgaggca
attctgaaacacaaatttgatgtgcagaaggctttgtccgtggttctggaacaagatggt
gtgcagccttggaaggagaagagtgagcgagcagtgtgtgcaggacagccttcaaaagga
aaatcagttatatctcggtcatcccagagtgaatctgaaattgtgccaaaagttgctaaa
atgactgtatccgggaagaagcagaccatgggatttgaagtgcctggcttaacttctgag
gaaaatggactcagtgtgcgcgctcctcacaaagggcctcctggtgatgatgtgagcgta
gcttctcctaacattcctgagaccggcactccaaaatctgccctcccacctccttccctt
caaacatcagaagagctgggctccactccgacaccagtgagaaagtctggcaagctgagg
cagcagatagacgtgaaagcggaattggaaaagcggcagggcgggaagcagctcctcaac
ttagtggtcattggtcatgttgatgctgggaaaagtactctgatgggccatatgctttat
cttctgggtaatgtaaacaaaagaactatgcataagtatgagcaagaatctaaaaaggct
ggcaaggcttcatttgcatatgcgtgggtcttggatgaaactggagaagaaagggaaagg
ggagtaacaatggacgtcggaatgacgaagtttgaaaccacaaccaaagttattacctta
atggatgctccaggccataaggatttcattccaaacatgatcacaggagcagcccaggcc
gatgtcgctgtcctggtcgttgatgccagcagaggagagtttgaagctggatttgagacg
ggaggacagacccgagagcatggccttttggtccgatctcttggagtgacacagcttgct
gtggctgtcaataagatggatcaggtaaattggcaacaagaaagatttcaagagattact
ggaaaactcgggcactttcttaagcaagcaggttttaaggagagtgatgtagcttttatc
ccgacgagcggtctgagtggtgagaatttaaccgcaaggtcacagtccagtgacctcacg
acgtggtacaaagggatgtgcttattggagcagattgattccttcaagccccctcagcgc
tcgattgacaaaccttttagattatgtgtgtctgatgtcttcaaagatcaaggatctggc
ttttgtgtgactggtaaaattgaagctggttatatccagactggtgaccgactgttagcc
atgccacccaatgaaacctgtactgctaaaggaatcactctgcacgatgagcctgtcgat
tgggcagcagcaggcgatcacgtaaatcttaccttggttgggatggacatcatcaaaatc
aatgtcggctgcatattttgtggccccaaagaacccattaaggcttgcacccgcttcaga
gcccgaatcctcgtcttcaatattgaagttccgatcactaaagggtttcctgtgctgtta
cactaccaaaccgtcagtgagcctgctgttattaagcgattgattagtgtcctaaacaaa
agtactggtgaagtcacaaagaagaagcccaagttgctgaccaagggccagaacgccttg
gtagagctgcagacacaaagaccagtggctcttgagctctacaaagacttcaaggagctg
gggcggtttatgctgcgttatggtggctccacagtagctgccggtgttgtcactgagata
aaagagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (14)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (12)   
DNA sequence (61)   
   RefSeq(nuc) (19)   
   GenBank (21)   
   EMBL (21)   
3D Structure (1)   
   PDB (1)   
Protein domain (7)   
   Pfam (7)   
All databases (106)   

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