KEGG   Mus musculus (house mouse): 66373
Entry
66373             CDS       T01002                                 
Symbol
Lsm5, 2010208O10Rik, 2310034K10Rik
Name
(RefSeq) LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03018  RNA degradation
mmu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    66373 (Lsm5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    66373 (Lsm5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    66373 (Lsm5)
   03041 Spliceosome [BR:mmu03041]
    66373 (Lsm5)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     66373 (Lsm5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     66373 (Lsm5)
Spliceosome [BR:mmu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    66373 (Lsm5)
SSDB
Motif
Pfam: LSM SM-ATX LSM14
Other DBs
NCBI-GeneID: 66373
NCBI-ProteinID: NP_079796
MGI: 1913623
Ensembl: ENSMUSG00000091625
UniProt: P62322
Position
6:complement(56678048..56681684)
AA seq 91 aa
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq 276 nt   +upstreamnt  +downstreamnt
atggcggctaacgcgaccacgaacccgtcccaactcctgccactagagcttgtggacaaa
tgtatagggtcaagaattcacattgtgatgaagagtgataaagaaattgtcgggacactt
ctaggatttgatgactttgtcaatatggtgttggaagatgtcacagaatttgaaattaca
ccagaaggaagaagaattacaaaattagatcaaattctactaaatggaaataatataaca
atgctggttcccggaggagaagggcctgaagtatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (17)   
   RefSeq(nuc) (1)   
   GenBank (8)   
   EMBL (8)   
Protein domain (3)   
   Pfam (3)   
All databases (66)   

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