KEGG   Mus musculus (house mouse): 67678
Entry
67678             CDS       T01002                                 
Symbol
Lsm3, 1010001J12Rik, 2610005D18Rik, 6030401D18Rik, SMX4, USS2
Name
(RefSeq) LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03018  RNA degradation
mmu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    67678 (Lsm3)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    67678 (Lsm3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    67678 (Lsm3)
   03041 Spliceosome [BR:mmu03041]
    67678 (Lsm3)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     67678 (Lsm3)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     67678 (Lsm3)
Spliceosome [BR:mmu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    67678 (Lsm3)
 Complex C
  U2 snRNP components
    67678 (Lsm3)
SSDB
Motif
Pfam: LSM TIG_SUH vATP-synt_E DUF150_C
Other DBs
NCBI-GeneID: 67678
NCBI-ProteinID: NP_080585
MGI: 1914928
Ensembl: ENSMUSG00000034192
UniProt: P62311
Position
6:91493017..91499602
AA seq 102 aa
MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq 309 nt   +upstreamnt  +downstreamnt
atggcggacgacgtagatcagcaacagaccaccaataccgtagaggagcccctggatctg
atcaggctcagcctggatgagcgaatttatgtgaaaatgagaaatgaccgagagcttcga
ggcagactacacgcttatgatcaacatttaaatatgatcctgggagatgtagaagaaact
gtgacaacgatagagattgatgaggagacatatgaagagatatataaatccacaaaacga
aacatccctatgctcttcgtccggggagatggcgtcgttctagtcgcccctccattgaga
gttggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (15)   
   RefSeq(nuc) (1)   
   GenBank (7)   
   EMBL (7)   
Protein domain (4)   
   Pfam (4)   
All databases (46)   

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