KEGG   Mus musculus (house mouse): 68299
Entry
68299             CDS       T01002                                 
Symbol
Vps53, 2010002A08Rik, 2310040I21Rik, 3100002B05Rik, Hccs1
Name
(RefSeq) VPS53 GARP complex subunit
  KO
K20299  vacuolar protein sorting-associated protein 53
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mmu04131]
    68299 (Vps53)
Membrane trafficking [BR:mmu04131]
 Protein recycling
  Others
   EARP complex
    68299 (Vps53)
 Endosome - Golgi transport
  Tethering complex
   GARP complex
    68299 (Vps53)
SSDB
Motif
Pfam: Vps53_N VPS53_C Vps54_N COG4_N FBF1 GrpE Laminin_II Sec8_N XhlA NBD94 hAT-like_RNase-H COG3_N COG5_N Med11 HrpJ
Other DBs
NCBI-GeneID: 68299
NCBI-ProteinID: NP_080940
MGI: 1915549
Ensembl: ENSMUSG00000017288
UniProt: Q8CCB4
Position
11:complement(75937052..76070464)
AA seq 832 aa
MMEEEELEFVEELEAVLQLTPEVQLAIEQVFPSQDPLDQADFNAVEYINTLFPTEQSLAN
IDDVVNKIRLKIRRLDDNIRTVVRGQTNVGQDGRQALEEAQKAIQQLFGKIKDIKDKAEK
SEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANLLQG
VMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTKRPGGPSNVLRD
ACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDRRYAWVKRQLVDYEE
KYGRMFPREWCMTERISVEFCHVTRAELSKIMRARAKEIEVKLLLFAIQRTTNFEGFLAK
RFSGCTLTDGTLKKLESPPPSTNPFLEDETTPEMEELALEKGELEQPKKPKAPDNPFHGI
VSKCFEPHLYVYIESQDKNLSELIDRFVADFKAQGPPKPNTDEGGAVLPSCADLFVYYKK
CMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTSSSSGGLTISSLLKEKEGSE
VARFTLEELCLICSILSTAEYCLATTQQLEEKLKEKVDVSLTERINLTGEMDTFSTVISS
SIQLLVQDLDAACDPALIAMSKMPWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTR
KYFTQFCIKFANSFIPKFITHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRK
APASYTKIVVKGMTRAEMILKVVMAPHEPLVVFVDNYIKLLTDCNSETFQKILDMKGLKR
SEQSSMLELLRQRLPAPPSGTEGSSTLSLIAPTPEQESSRIRKLEKLIKKRL
NT seq 2499 nt   +upstreamnt  +downstreamnt
atgatggaggaggaggaactggagtttgtggaggagctggaggctgtgctgcagctcacg
ccagaggtgcaactcgccatcgagcaggtattcccaagccaggatcctcttgatcaagct
gacttcaatgccgttgagtatatcaatactctgttcccaacagagcaatctctggcaaac
attgacgatgttgtgaacaaaattagactgaaaataaggagactggatgacaatatccgg
actgtcgtaagaggtcagacaaatgtggggcaggatggaaggcaagcacttgaagaggcc
cagaaagccattcagcaactctttggcaaaatcaaggatatcaaagacaaagcagaaaag
tcagaacaaatggtgaaagagatcacccgagatattaagcagttagatcacgccaagcgc
cacctgaccacctcaatcacgaccctgaaccacctgcacatgctggcaggcggggtggac
tccctggaagccatgaccaggcgcagacagtatggagaagttgctaatctccttcagggt
gtaatgaatgttctggagcactttcacaaatacatgggaatcccacagatccgacagctt
tctgaaagggtgaaggctgcacagacagagttaggacagcaaatcctggctgactttgaa
gaagcatttccttcgcagggtaccaagaggccgggaggacccagcaatgtcctgagagat
gcgtgcctggtggctaatattttggaccccagaatcaaacaagaaatcatcaaaaagttt
attaaacagcatctatcagagtatctagtactttttcaagaaaaccaagatgtcgcctgg
ctggacaaaattgacagacgttatgcttgggtgaaacgccagcttgtggactatgaagag
aagtatggccggatgtttcctcgggagtggtgcatgacggagaggatctcagtagagttt
tgccacgtgacgagggcagaactttccaaaatcatgcgtgccagagctaaggaaattgaa
gtgaaattgcttctttttgcgatccagagaacaaccaactttgaggggtttcttgcaaaa
cgcttctccggttgcaccctgacagatggaaccctgaaaaagctggagtccccaccacca
tctaccaatcctttcctggaagatgagacaacaccagagatggaggagctggctctggag
aaaggagagttagagcaaccgaagaagcccaaggccccggacaacccgttccacggcatc
gtttccaagtgttttgagcctcatctctacgtgtacattgagtcccaggacaaaaacctc
agcgagctgatagaccggtttgtggcagatttcaaagcccagggcccacccaagcccaac
actgacgaagggggtgctgtgctccccagctgcgctgacctctttgtctactacaagaag
tgcatggtgcagtgctcacagctcagcacaggcgagcccatgatcgccctgactaccatc
ttccagaagtacctccgagaatacgcctggaaaatcctctctggcaacctgcctaaaacc
agcagcagcagtggggggctgaccatcagcagcctcctcaaagagaaggagggctcagaa
gtggccaggttcactctggaggagctgtgtctcatctgcagcatcctgagcacagccgag
tattgtctggctaccacccagcagctagaagaaaaactcaaagaaaaagttgatgtgagc
ctgactgaacgaattaatctcacaggagaaatggacacattcagcactgtcatctccagc
agcatccagctgttggttcaagatctggatgcagcctgtgaccctgccctgattgccatg
agcaagatgccttggcagaacgtggagcatgttggtgaccagagcccttatgtcacttct
gttattcttcacattaagcaaaacgtccccatcatccgtgacaacctggcttccacacgg
aaatacttcacacagttctgcattaaatttgcaaattcgttcattcccaaattcatcacc
cacctcttcaagtgtaagccgatcagcatggtgggagcagagcagcttctgctggacacc
cactccctgaagatggtcctgctcgaccttccgtccattggctcccaggtggtgaggaag
gcccctgccagttacactaagattgtcgtgaaaggcatgacccgggctgaaatgatcctt
aaggtggtgatggcccctcatgaaccgttggtggtatttgttgacaactacatcaaactc
cttacggactgcaactcagaaaccttccagaaaatactggatatgaaggggctgaagagg
agtgagcagagcagcatgctggaacttttgcggcagaggctccctgccccgccctcgggg
acagaaggttccagcaccctgtcgctgattgccccaacaccggagcaggagtcatcccga
atccgcaaactggagaaactgattaaaaagagactgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (75)   
   RefSeq(nuc) (3)   
   GenBank (36)   
   EMBL (36)   
Protein domain (15)   
   Pfam (15)   
All databases (105)   

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