KEGG   Mus musculus (house mouse): 71799
Entry
71799             CDS       T01002                                 
Symbol
Ptcd1, 1110069M14Rik
Name
(RefSeq) pentatricopeptide repeat domain 1
  KO
K17710  pentatricopeptide repeat domain-containing protein 1
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mmu03016]
    71799 (Ptcd1)
   03029 Mitochondrial biogenesis [BR:mmu03029]
    71799 (Ptcd1)
Transfer RNA biogenesis [BR:mmu03016]
 Eukaryotic type
  3'processing and CCA adding factors
   3'processing factors
    71799 (Ptcd1)
Mitochondrial biogenesis [BR:mmu03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    71799 (Ptcd1)
SSDB
Motif
Pfam: PPR_2 PPR_3 PPR_long PPR PPR_1 MNE1
Other DBs
NCBI-GeneID: 71799
NCBI-ProteinID: NP_598496
MGI: 1919049
Ensembl: ENSMUSG00000029624
UniProt: Q8C2E4
Position
5:complement(145084188..145103914)
AA seq 695 aa
MDLLRLSRLFSGPRPIGLSVLQHLDLVGSTRWTGGREGPARLRAAFCGSSSPLPLGSGNQ
KEMSSLCSDSSKLSTVAPQEEAEEESFGSLSGKFSSRRIFHKSTAQLYNLQLKEQGGEEE
ELEPRPWRGRRNTQYWYFFQCKRLIKEGKLAEALDLFERQMLKEERLQPLECNYTVLIGG
CGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQLQARN
FQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFLLVGCIQDKKTGFRQ
AMQVWRQMLSLGIKPSRHGYNLLLEAARDCGLGDPEVASRLLLTSQEETILLPPPKGRHM
AGRKVQAKTVHGVSLRHVEALERQLFLEPSQKLEGPPALPEARVTSRTQPEVETTAEPGH
TVALTPLASKPTHLELEVSLLSLGTLSPAVVSFGTVATPADRLALMGGLEGFLGKMTEHG
LQPDIKTLTLLAEVVEPGSTAESSLLSVLDRHRVEADVTFFNTLIRKKSKLGDLEGAKAL
LPILAKKGIVPNLRTFCNLAIGCHRPRDGMQLLADMKKSQVSPNIHIYSTLINAALKKLD
YTYLISILKDMRQNSVPVNEVVVRQLEFAAEYPPTFDRYKGKNTYLEKIDGFRAYYKQWL
KAMPAEEAPHPWQEFQNKPVGDQDTTDKAGGLRDG
NT seq 2088 nt   +upstreamnt  +downstreamnt
atggacctcctaagactctcccggctcttttccggtccccgccccataggactgtctgtc
cttcaacacctggatcttgttggatcaacccgatggacaggaggcagggagggacctgca
cggctgagagctgccttctgcggctcctcctccccgctgcccctgggcagcgggaaccag
aaggaaatgagcagcctctgctctgactccagtaagctcagcactgtggctccccaggag
gaggcagaggaagagagcttcgggagcctctctggcaaattctcctcccggaggatattc
cacaagtcaacggcccagctctacaacctgcagctcaaggaacagggtggtgaggaggaa
gaactggagcccagaccgtggcggggccggaggaacactcagtactggtacttctttcag
tgcaaacgtctgatcaaggaaggaaagcttgcagaggccctggatctgtttgagaggcag
atgctgaaggaagagcgcttgcagcctctggagtgcaactacacggtgctgattgggggc
tgcgggcgcgtcgggtacctgaagaaggctttcagactcttcaatgatatgaagaagaga
gacctggagccctcggatgccacatacacagctctgttcaatgtctgtgcggagtccccc
tggaaggactctgccctgcagagtgccctgaagctccgacagcagctccaggccagaaac
ttccagctcaacctgaaaacgtatcatgccctgctgaaggtggccgccaagtgtgcagac
ctcaggctgtgcctggatgtcttcaaggaaatcatccaaagggggcatgcagtcacagag
gagaccttctgttttctgcttgtgggctgcatccaggacaagaagacaggcttccggcaa
gccatgcaggtgtggcggcagatgctgagtctggggatcaaaccaagtaggcatggctac
aacctcctgttggaggcagctcgagactgtggtctgggggacccagaggttgcctccagg
ctgctcctgacgtcccaggaagagaccatcttgctcccacccccaaagggcaggcatatg
gcagggaggaaagtccaggccaagacagtgcatggtgtgtcactcagacatgtggaagca
ctggagaggcagctgtttctggaaccttctcagaaactcgaggggccaccagcccttcct
gaggccagggtaacaagcaggacccagcctgaggtggaaaccacggcagaacctggccac
acagtagccctcaccccactggcctcgaaacctacccacttggagctggaagtcagtctc
ctaagtcttggaactctctcccccgctgtggtctcatttgggacagtggccacacctgct
gataggctggcgttgatggggggcctggaaggcttcctgggcaagatgaccgaacacggg
ctccagccagacatcaaaaccctcactctgctggctgaggtggtggagcctgggagcact
gcagaatcctcgctgctttccgtcctggacaggcatagggtggaggccgacgtaaccttc
ttcaacacgctgataaggaaaaagagcaaactgggagacctggagggagccaaggcactg
ttgccaatcctggcaaagaagggaattgtccccaatcttcggactttctgcaatctggcc
attggttgccatcggcccagggatggtatgcagctgcttgcagacatgaagaagtcccag
gtgagccctaacatccacatctacagcacccttatcaacgcagccctcaagaagttggac
tacacctatctcatcagcatcctgaaggacatgaggcagaacagcgtcccagtaaacgag
gtggtcgtccgccagctggagtttgcagccgagtaccctcccacctttgaccggtacaaa
ggaaaaaacacctacttggagaagattgatggctttcgggcttattacaagcagtggttg
aaagccatgccagcagaggaagccccccacccctggcaggagttccagaacaagcctgtt
ggggaccaagacaccactgacaaggctggcggccttagggacggatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (50)   
   RefSeq(nuc) (2)   
   GenBank (24)   
   EMBL (24)   
Protein domain (6)   
   Pfam (6)   
All databases (82)   

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