KEGG   Mus musculus (house mouse): 74133
Entry
74133             CDS       T01002                                 
Symbol
Smg8, 1200011M11Rik
Name
(RefSeq) SMG8 nonsense mediated mRNA decay factor
  KO
K18734  protein SMG8
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    74133 (Smg8)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     74133 (Smg8)
SSDB
Motif
Pfam: Smg8_Smg9
Other DBs
NCBI-GeneID: 74133
NCBI-ProteinID: NP_077224
MGI: 1921383
Ensembl: ENSMUSG00000020495
UniProt: Q8VE18
Position
11:complement(86968558..86977603)
AA seq 991 aa
MAGPVSLRELLMGASAWLGSESPGGPSAEGGGNAAGTPEPPWREDEICVVGIFGKTALRL
NSEKFSLVNTVCDRQVFPLFHHQDPGDPGTGIKTKAVSVGEAGGAGDPGAAAGDSLRGGM
ATAEGNRAEPGPQDFSLLQAYYNQESKVLYLILTSICDNSQLLRACRALQSGEAGGGLSL
PHAETHEFWKHQEKLQCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDGLRQKVLPL
LKTAIKDCPVGKDWKLNCRPCPPRLLFLFQLNGALKVEPPRSQDTAHPDKPKKHSPKRRL
QHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDPIGMLLDQLRSHCT
VKDPESLLVPAPLSGPRRYQAMRQHSRQQLSFHIDSSTSSSSGQLVDFTLREFLWQHVEL
VLSKKGFDDSVGRNPQPSHFELPTYQKWISAAAKLYEVAIDGKEEDLGSPTGELTSKILS
SIKVLEGFLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHAR
GPAFHKYAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEKPEADRNPPVLY
HNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKCCGKLDHINFPVFEPSTPDP
APAKNEPSPAPPDSDAEKLKEKEPQTQGESTSLSLALSLGQSTDSLGTYPADPQAGGDNP
EVHGQGEGKSEKRPNLVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGPAKSYNFH
TGLDQQGFVPGTNYLMPWDIVIRTRAEDEGDLDTNSWPAPNKAIPGKRSAVVMGRGRRRD
DIARAFVGFEYEDSRGRRFMCSGPDKVMKVMGSGPKESALKALNSDMPLYILSSSQGRGL
KPHYAQLMRLFVVVPDAPLQIILMPQVQPGPPPCPVFYPEKQEITLPPDGLWVLRFPYAY
VTERGPCFPPKENVQLMSYKVLRGVLKAVTQ
NT seq 2976 nt   +upstreamnt  +downstreamnt
atggcggggccggtcagcttgcgcgagctgctcatgggggcgtcggcctggctgggctct
gagagtcctggaggcccctccgctgaaggcgggggaaacgcggctggcacgcccgagccc
ccgtggagggaggatgagatctgcgtggtgggaatcttcggcaagacggctctgcgcctc
aactccgagaagttctctctggtgaatactgtgtgcgatcgacaggttttcccactcttt
caccatcaggatcctggagatccaggaactggaatcaagaccaaagctgtctctgtcgga
gaggcgggaggagccggagaccccggggctgcagccggggattcacttcgcggaggtatg
gctacggcggaaggtaaccgagctgagccaggtccccaggacttcagtcttttgcaggcc
tattacaatcaggaaagcaaagttctgtatcttattctcacttccatctgtgacaactca
cagcttctgcgtgcttgtcgggccctccagagcggtgaagccggagggggcctctcttta
cctcatgcagaaacacacgagttctggaagcatcaggagaagttacagtgtctcagcctc
ctttacctcttctctgtctgtcatatcttgctcctggtccatccgacgtgttcctttgac
atcacttatgatcgtgtattcagagccctggatggactgagacagaaagtactacccctc
ctcaaaacagccattaaggattgcccagttggcaaagactggaagttaaactgccgacct
tgcccacctagactcctcttcctctttcaactcaatggggcccttaaggtggaaccgcct
cggagccaggatacagctcatccagataaacccaagaagcactctcccaaaagaaggctg
cagcatgccctggaggaccagatctatagaatctttcgcaagagtcgagtcttgactaat
cagagtatcaactgcctctttacggtacctgccaaccaagcttttgtgtacatagtcccc
ggaagccaggaggaggacccaattggcatgttgctggaccagcttaggagccattgtacc
gtgaaagacccagaatcgttgttggtgcccgcacccctttctggacctaggcggtaccaa
gcgatgagacagcacagccgccaacagctctccttccacattgatagcagcacctcgagt
tcttcaggccagctagtggatttcactcttcgagaattcctgtggcagcacgtggagctg
gtcctaagcaaaaaaggttttgatgacagtgtgggcaggaacccacagccttcccatttt
gaactgcccacttaccagaagtggatctctgcagcagcaaagttgtatgaagtggctatc
gatgggaaggaagaggacttgggctcccccactggggagctaacatctaagattttaagc
agtattaaagtcttagaagggtttttggatatagacacaaaattctcggaaaaccggtgc
caaaaagctttacccatggctcatagtgcctaccagtcaaacttgccgcataattacacc
atgacagtccataagaatcagcttgctcaggctcttcgggtatacagtcagcatgctcga
ggtccagcctttcacaaatatgccatgcaattacacgaagactgctacaaattttggagc
aatggccatcagctgtgcgaagagaggagcttgactgaccaacactgtgtccacaaattt
cattccttacctaaatcaggagaaaagccagaggcagataggaaccctcctgtgctctac
cacaatagccgagcccgatccaccggagcctgcaactgcggaaggaagcaggcacctcga
gacgaccccttcgatatcaaggctgctaactatgacttttaccagcttctggaagaaaaa
tgttgtgggaaattggatcatatcaatttccctgtatttgagccaagtactccagatccc
gctcctgctaaaaatgaaccctctcctgccccgccagactcggacgccgagaaactgaag
gagaaagaacctcaaacccaaggagagagcacaagcctcagcttagctttgagcttgggc
cagtcaacagatagcctaggtacctaccccgctgatccacaggcaggaggagacaaccca
gaagtccacgggcaaggagaaggaaagtctgagaagagaccaaacttggttgaccgtcag
gcatccacagttgaatatctcccaggcatgctacattcaaattgccccaaaggtctccta
cccaaattctccagctggtctttggttaaactaggcccagccaagtcttacaactttcat
acaggtttggaccaacagggcttcgttccaggaacaaactatcttatgccttgggacatt
gtcatcaggactagagctgaagatgaaggagacttagacacgaactcctggcctgctcca
aataaagctattcctgggaagagaagtgcagttgtgatgggcagaggaaggcggagggat
gacatagctcgagcctttgttggctttgagtatgaagactctcgaggtcggaggttcatg
tgctcagggcctgacaaagtaatgaaagtgatgggaagtggacccaaggagtcggcttta
aaagccctcaacagtgacatgcccctgtacatcctgtcctcgtcgcagggcagagggctg
aagccacattatgctcaacttatgaggctttttgttgtggttcctgatgctcctttgcag
ataatactgatgcctcaggttcaaccaggcccaccaccatgtccagtattttacccagaa
aaacaagaaatcactctcccacctgatggcctttgggtcttgagatttccttatgcctat
gtgactgagagaggaccttgtttccctcccaaggagaatgtgcagctcatgagctacaag
gtgctccgaggagtcctcaaagcagttacacaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (13)   
   RefSeq(nuc) (1)   
   GenBank (6)   
   EMBL (6)   
Protein domain (1)   
   Pfam (1)   
All databases (42)   

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