KEGG   Mus musculus (house mouse): 76246
Entry
76246             CDS       T01002                                 
Symbol
Rtf1, 2900005O08Rik, 6530416A09Rik, Gtl7, cbp82
Name
(RefSeq) RTF1, Paf1/RNA polymerase II complex component
  KO
K15178  RNA polymerase-associated protein RTF1
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmu03021]
    76246 (Rtf1)
Transcription machinery [BR:mmu03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    PAF1 complex
     76246 (Rtf1)
SSDB
Motif
Pfam: Plus-3
Other DBs
NCBI-GeneID: 76246
NCBI-ProteinID: NP_084388
MGI: 1309480
Ensembl: ENSMUSG00000027304
UniProt: A2AQ19 Q9CTY6
Position
2:119505549..119565888
AA seq 715 aa
MRGRLCVGRAAAVAAAVAAAAVAVPLAGGQEGSQGGVRRGSRGTTMVKKRKGRVVIDSDT
EDSGSDENLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKG
KTRKVEKKGAMKKQANKAASSGSSDRDSSAESSAPEEGEVSDSESSSSSSSSDSDSSSED
EEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKE
KKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNR
TAELLAKKQPLKTSEVYSDDEEEEDDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSL
PEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVY
QLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKK
ELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQI
QDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVAESHNMRNQQMDPFT
RRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKTASDLS
EDLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI
NT seq 2148 nt   +upstreamnt  +downstreamnt
atgcgcggtcgcctttgtgtgggtcgagcggcggcggtggcggcggcggtggcggcggcg
gcagtggcggtcccactggcaggcgggcaagaggggagtcagggcggcgtccggcgtgga
agccgggggaccaccatggtaaagaagcggaaaggccgtgtcgtgatcgactcggatacg
gaagacagcggcagtgacgagaacctggatcaggagctcttgtccctggcgaaacggaag
cgcagtgactccgaggagaaggagcctcctgtgagtcagcctgcagcctcatcagattca
gagacctccgacagtgatgatgagtggacatttgggagcaataaaaataagaagaaagga
aaaaccagaaaagtagagaagaaaggagccatgaagaagcaagccaacaaagctgcctcc
tcgggcagctcagacagagacagctcagctgagagctctgcccctgaggaaggtgaagtg
tcagattctgagagcagcagctcctcttccagttcagattcagactcctcgtcagaagat
gaagaattccatgatggctatggagaggatcttatgggagatgaggaagatagggcccga
ctggagcagatgacggagaaggagagggagcaggagctcttcaaccgcatagagaagaga
gaggtgttgaaaagaagatttgaaattaagaaaaaactaaaaacagccaaaaagaaagag
aagaaagaaaaaaagaaaaagcaggaagaagaacaagaaaagaagaagctgacacagatt
caggaatctcaggttacttcccacaataaagaacggcgttccaagcgggatgaaaaacta
gataagaaatctcaagccatggaggagctaaaagcagagcgagaaaaacggaagaacaga
acagctgagctcctcgccaaaaaacagccattgaaaaccagtgaggtctactctgacgat
gaggaggaggaagatgatgacaagtccagtgagaaatcggaccgctcatcccggacatca
tcatctgatgaagaggaagagaaagaagaaatccctccaaaatcacagccagtctcatta
cccgaggaactgaatcgggttcggttatcacggcataagctagagcgctggtgtcacatg
cccttctttgctaaaactgtcacaggatgttttgtacggattggcattggaaaccacaat
agcaagccagtttaccgggtggctgagatcacgggtgttgtggaaactgccaaagtttac
cagctgggtggcaccagaacaaataaagggctccagctacggcatggcaatgaccagcga
gtgttccgcctagagtttgtgtccaaccaagaattcactgaaagtgaattcatgaagtgg
aaagaagcgatgttttctgctggcatgcagttgcccacactagatgaaatcaataaaaag
gaattatctattaaggaagctctcaattataaattcaatgatcaggacattgaggagatt
gtaaaagagaaggaaaggttcagaaaagccccaccaaactatgctatgaagaagactcag
ctgctaaaggagaaggctatggctgaggacctgggagatcaggacaaagccaaacaaatc
caagaccagctaaatgagctagaggagcgagcagaggccctggaccgccagcggaccaag
aacatatctgctatcagctacatcaaccagcggaatcgggagtggaatattgtggagtct
gagaaggctctggtggctgaaagtcacaacatgagaaaccaacagatggaccccttcacc
aggcggcagtgcaaacccaccatcgtctctaattccagggatccagctgttcaggctgcc
attttggcccagctcaatgcaaaatacggttctggggtattaccagatgctccaaaggaa
atgagcaagggtcaaggaaaggataaagatttgaattctaagacagccagtgacctctcg
gaagacctgttcaaagtgcatgactttgacgtgaagattgacttacaggttccaagctca
gagtcaaaagctttggccattacctccaaagccccaccagccaaggacggagctccgagg
agatctctgaacttagaagactacaaaaaacgacgggggcttatttga

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Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (7)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (32)   
   RefSeq(nuc) (4)   
   GenBank (14)   
   EMBL (14)   
Protein domain (1)   
   Pfam (1)   
All databases (80)   

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