KEGG   Mus musculus (house mouse): 76522
Entry
76522             CDS       T01002                                 
Symbol
Lsm8, 2010003I05Rik, Naa38
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03018  RNA degradation
mmu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    76522 (Lsm8)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    76522 (Lsm8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    76522 (Lsm8)
   03041 Spliceosome [BR:mmu03041]
    76522 (Lsm8)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     76522 (Lsm8)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     76522 (Lsm8)
Spliceosome [BR:mmu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    76522 (Lsm8)
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 76522
NCBI-ProteinID: NP_598700
MGI: 1923772
Ensembl: ENSMUSG00000044155
UniProt: Q6ZWM4
Position
6:18848634..18854051
AA seq 96 aa
MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH
NT seq 291 nt   +upstreamnt  +downstreamnt
atgacgtctgctttggagaactacatcaaccggactgtggctgttattacttctgatggc
agaatgattgtgggaacactaaaaggttttgaccagaccattaacttgattttggatgaa
agccatgagcgggtgttcagctcttcacagggagtagaacaagtggtgttggggttatac
attgtgaggggcgacaatgtagcagtcattggggaaatagatgaagagacggattctgca
ctcgacttggggaacatccgagcagagcctctgaactccgtagcacactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (11)   
   RefSeq(nuc) (1)   
   GenBank (5)   
   EMBL (5)   
Protein domain (2)   
   Pfam (2)   
All databases (34)   

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