KEGG   Pseudomonas aeruginosa PAO1: PA3161
Entry
PA3161            CDS       T00035                                 
Symbol
himD
Name
(RefSeq) integration host factor subunit beta
  KO
K05788  integration host factor subunit beta
Organism
pae  Pseudomonas aeruginosa PAO1
Brite
KEGG Orthology (KO) [BR:pae00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pae03032]
    PA3161 (himD)
   03036 Chromosome and associated proteins [BR:pae03036]
    PA3161 (himD)
   03400 DNA repair and recombination proteins [BR:pae03400]
    PA3161 (himD)
DNA replication proteins [BR:pae03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    PA3161 (himD)
Chromosome and associated proteins [BR:pae03036]
 Prokaryotic type
  Nucleoid associated proteins
   IHF (integration host factor)
    PA3161 (himD)
DNA repair and recombination proteins [BR:pae03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Facilitator
      PA3161 (himD)
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-DNA_bdg HU-CCDC81_euk_1 HU-CCDC81_euk_2 CATASP
Other DBs
NCBI-GeneID: 882561
NCBI-ProteinID: NP_251851
UniProt: Q51473
Position
complement(3547689..3547973)
AA seq 94 aa
MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV
GRNPKTGESVRLDGKFVPHFKPGKELRDRVNEPE
NT seq 285 nt   +upstreamnt  +downstreamnt
atgaccaagtcggagttgatcgaacggatcgttacccatcaggggcaactgtccgcgaag
gatgtcgagttggcaatcaagaccatgctggagcaaatgtcccaggccctggcgaccggg
gaccggatcgagatccgtggcttcggcagcttttccttgcactaccgcgccccgcgcgtc
ggtcgcaaccccaagaccggggagtcggtacgcctcgacggcaagttcgtgccgcacttc
aagccgggcaaggagttgcgggatcgggtcaacgagccggagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (39)   

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