#=GF ID Agro_virD5
#=GF AC PF04730.16
#=GF DE Agrobacterium VirD5 protein
#=GF AU Mifsud W;0000-0002-9805-6461
#=GF SE Pfam-B_3261 (release 7.5)
#=GF GA 25.00 25.00;
#=GF TC 27.70 26.80;
#=GF NC 22.40 19.90;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 75585367 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Family
#=GF RN [1]
#=GF RM 3658701
#=GF RT Molecular characterization of the virD operon from Agrobacterium
#=GF RT tumefaciens.
#=GF RA Porter SG, Yanofsky MF, Nester EW;
#=GF RL Nucleic Acids Res 1987;15:7503-7517.
#=GF DR INTERPRO; IPR006819;
#=GF DR SO; 0100021; polypeptide_conserved_region;
#=GF CC The virD operon in Agrobacterium encodes a site-specific
#=GF CC endonuclease, and a number of other poorly characterised
#=GF CC products. This family represents the VirD5 protein.
#=GF SQ 18
#=GS A0A7G8BNS9_9BACT/3-143 AC A0A7G8BNS9.1
#=GS A0A813RYN6_ADIRI/602-851 AC A0A813RYN6.1
#=GS A0A815PTD4_ADIRI/5006-5254 AC A0A815PTD4.1
#=GS A0A386E9M4_9HYPH/167-838 AC A0A386E9M4.1
#=GS A0A4U7JH97_9FIRM/87-359 AC A0A4U7JH97.1
#=GS B9K400_AGRVS/40-164 AC B9K400.1
#=GS A0A2W4B1G5_9HYPH/33-212 AC A0A2W4B1G5.1
#=GS A0A2W4BL80_9HYPH/36-170 AC A0A2W4BL80.1
#=GS A0A386E9M4_9HYPH/39-171 AC A0A386E9M4.1
#=GS A0A7X0STS9_9BACL/18-292 AC A0A7X0STS9.1
#=GS A0A1I3KKT3_9PSEU/1487-1579 AC A0A1I3KKT3.1
#=GS A0A2W4BL80_9HYPH/167-834 AC A0A2W4BL80.1
#=GS A0A815B560_9BILA/777-919 AC A0A815B560.1
#=GS B9K400_AGRVS/165-819 AC B9K400.1
#=GS A9CL19_AGRFC/167-837 AC A9CL19.1
#=GS A0A1I3KKP3_9PSEU/1400-1585 AC A0A1I3KKP3.1
#=GS A0A172U3C0_9GAMM/20-241 AC A0A172U3C0.1
#=GS A9CL19_AGRFC/37-168 AC A9CL19.1
A0A7G8BNS9_9BACT/3-143 ..........................stcgkssalatwgkvpkrvaesyp------------------------------------------------------------------------.-.----.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.-------------------------------------------------------------------------------------------------------....--------EGTHGAKKRAQKRLKTS.....GK......T......HQSEHTVGYEVF.GDS.....L.......DRGK....SpfAQV...IENRAPAYQEELDAHRGHIGTGTW....KD........-Y.......RKTG...V.SSD-QYRRDQRRMVSNK-.---.-..--..QVGNAVQFNQLNYAYQ--------------------------------.------...--------------------------------------------------------------------------------------------------------------------pefrnpd............
A0A813RYN6_ADIRI/602-851 ...................dtdtskrpklnsneeeekrdqtprtsrsqer------------------------------------------------------------------------.-.----.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.---------------------------------------------------------------------------------------------EKKEETPQVK....KRRSSSERRGTFGGRYKERDRLAAEhdtpvTG.....eT......HEAEHVYPYGSV.TDG.....L......sRKSP....A..GRQ...LANESLAYYENRDAHRQHIGTGSS....QG........S-.......----...-.---VAYRRATRTAL----.--V.E..ER..SAGNAIQLNQLEYAHTSAF----VKNRNHISLEISDDSFSSMLMSARNrPIPYRD...NNNSSPPIVQLTDTDIKESLLARWTARHARYPSSSEAQGIIWKFYEAYKL------------------------------------------------------------------rspdgar............
A0A815PTD4_ADIRI/5006-5254 ....................dtskrpklnsnegeekrdqtprtsrsqere------------------------------------------------------------------------.-.----.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.----------------------------------------------------------------------------------------------KKEETPQVK....KRRSSSERRGTYGDRRKERDRLAAE.....HGtpvtgeT......HEAEHVIPYASV.ADG.....L......sRESP....A..GRQ...LANESLAYCEDKDAHRQHVGTGSS....--........--.......----...-.PASVAYRQAIRTTV----.--V.E..ER..SAGNAIQLNQLEYAHTSAFVEK----RNDKS--LEISDDSFSSMLMSI.KNRSIPyrdNNNPSPAIIQLTDADIKECLLARQTARQARYPSSSEAQGIIWKFYEAYKL------------------------------------------------------------------rspdrart...........
A0A386E9M4_9HYPH/167-838 ..................................................EEFRSEASKRKRKKPIDQDENSSTSFYHDGMRLGEPEREAYDNWGNAEPPTWKDLVLKARLDAIDSSAWLFA.S.EGSS.STFEYEGIPLGEGERQAYKEWQEDAQPTWEDLVVNARMAELDHSSWITDEHNSLEENLEFGPDARQASLKDSTDQRKSSSASFIYDGMKLGEPEHAAYENWSKPERPSWEALILDARQASIASSSVSNSLLAKTSSPVFLYEGMSLGDAERQAYGRWRQPAQPRWQNLVVNARLADLDPLAWIPDEHDPFAEAEALSPTSQSSGANKSNRALGnQSDSGRP-AFAYLAAQEASHLQSPACSQLETRRALNFGSPGPDANPTESIAKCNRLDGVSKIKRLGTKGRRAVNATIHGGKFGAQGLLSEDCGQAAEPSPSEQ....TTRPRTDNIGTYASRKNERARLATE.....TG......K......YESEHIFGFKVV.HDT.....L.......RATK....E..GRR...LERPMPAYLEYKELHRQHVGTGRG....RT........GL.......VGRG...W.PDDASYRADQRATLSDPV.ASA.E..GA..TASNGYQLNQLGYAHQLATHGLQSETPDGVTMPIQVATISYNYTVSRD.PVLSPP...SKEQAPPLLHLGPRGQTEAVLARETALTGKWPTLERECQVYQRFLALYDVKKDLDAKQLGVRQKKQALVAALNRTAGLIGASPLEAQSSTAEVEYTTDEPDERRVYDPRDRGRDKA...................
A0A4U7JH97_9FIRM/87-359 agtlqltrskrivktnkkgssrippkikkagktssnrmfviglpqgsirf------------------------------------------------------------------------.-.----.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.-------------------------------------------------------------------------------------------------------....-------NIGQHGAKSKEQERLTEL.....FG......KvvsgstHQSEHTIGYAVL.ADG.....W.......LPRK....E..SRDahiLENIAPAYQEVHDLHRAHIGTGSNskpdQT........GMnadeyreMQRG...LlVGDTDYHKQLASRPYNPIgASA.KerQN..AVSNAVQINQLGYG-QLLHSGNTHISLDDIV--LKQAINSYNTMVKNM.SDVKYM...KNATTAESVSVGEVSKLEMILARSAAISGKWPKAQMEQ------------------------------------------------------------------------------inllleqf...........
B9K400_AGRVS/40-164 ...........................................gstsdgq---------------TDHWENSCSPFFYDGMRLGAAERSAYETWDRADRPGWKDPIINARMSAIDSSDWNLDfR.ESTS.STFVYEGVPLVEGERRAYEEWMEPGQPSWEQLVVNARIEQLHAASSIPNE-------------------------------------------------------------------------------------------------------------------------------------------------------------------.-------------------------------------------------------------------------------------------------------....-------------------------.....--......-......------------.---.....-.......----....-..---...------------------------....--........--.......----...-.------------------.---.-..--..------------------------------------------------.------...--------------------------------------------------------------------------------------------------------------------cdfvq..............
A0A2W4B1G5_9HYPH/33-212 ..........................................eprshrad---------DSLEDHTDQSEYPSASFDHDGVKLGAAEREACEYWDGFDRPTGKDLVLRARLDAIDSSAWLPD.L.DNESpSIFRYEEVPLGEGERRAYEEWQENAEPMWEDLVVNARTAELGHSFGNIEEYESGNKVEDIRVEPLKRKRRNSTDQDKSSALSFRYDGMTLAEPEQAPRS------------------------------------------------------------------------------------------------------------------.-------------------------------------------------------------------------------------------------------....-------------------------.....--......-......------------.---.....-.......----....-..---...------------------------....--........--.......----...-.------------------.---.-..--..------------------------------------------------.------...--------------------------------------------------------------------------------------------------------------------rirh...............
A0A2W4BL80_9HYPH/36-170 .......................................nrcagsssdgq---------------TDHGEESSASFFYDGMRLGVAERSAYETWDGADRPTWRDLVLSARLNDIDSSAWNFD.GgQTTS.SVFVYEGVTLGEGERRAYEEWTEPGQPGWQELVVNARTAELHPSAAVSHERDPPERSTEL---------------------------------------------------------------------------------------------------------------------------------------------------------.-------------------------------------------------------------------------------------------------------....-------------------------.....--......-......------------.---.....-.......----....-..---...------------------------....--........--.......----...-.------------------.---.-..--..------------------------------------------------.------...--------------------------------------------------------------------------------------------------------------------r..................
A0A386E9M4_9HYPH/39-171 .........................................addslegqt----------------DRGEHPSASFDYDGMKLGAAEREAYENWCPSNRPTWKDLVLRARLDAIDSSAWLPD.LgEESP.LIFRYEGIPLGEGERQAYKEWQEDAQPTWEDLVVNARMAEPDPCADIADEHNSLKEGEEFRS-------------------------------------------------------------------------------------------------------------------------------------------------------.-------------------------------------------------------------------------------------------------------....-------------------------.....--......-......------------.---.....-.......----....-..---...------------------------....--........--.......----...-.------------------.---.-..--..------------------------------------------------.------...--------------------------------------------------------------------------------------------------------------------...................
A0A7X0STS9_9BACL/18-292 ........................gaasgrsgsapggwqalqrtvgnqav------------------------------------------------------------------------.-.----.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.-------------------------------------------------------------LQMIGGDGRPARRKNLKDTSSTREERLAKTVEAAKKKRKNEKddalAVRRGKYTLGMHGYKKSEQKRLSNAygisvTG.....sT......HESEHTIGFEPL.NQT.....S.......GNKRgenaT..ARS...LENRAPAYQEVKELHRDHIGTGTH....GS........-R.......DASG...F.-NSEEYRNSQRSLL----.---.E..AG..DVSSAVQLNQLGYAFDPNKSALT-ATEEG-----KAATDSYDTMVANM.NSVAY-...AQDDDEVSVGVDAKQKAEMYLARRAAITGKFPTIEEENAA----------------------------------------------------------------------------rikfgl.............
A0A1I3KKT3_9PSEU/1487-1579 .............................................aekan------------------------------------------------------------------------.-.----.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.-------------------------------------------------------------------------------------------------------....-------------------------.....--......-......------------.---.....-.......--MK....H..ARR...LEDNAPAYQESYDSHRANIGTGT-....KT........DR.......DGSN...M.NAD-EYRESQRNLLAGNN.APG.H..NTpgNAGDAVQLNQLTYAHQH-------------------------------.------...--------------------------------------------------------------------------------------------------------------------ykpemvdn...........
A0A2W4BL80_9HYPH/167-834 .................................................t-ELRSDAPKRKRKGSIDQDESVPSSFYYDGKRLSSPEREVYDNWSKPEPPSWRDLIINARLDAIDRSAWLRE.-.SGGA.SVFEYEGIPLGEGERLAYESWLEPAQPGWEDLVVNTRTAELNQSARASCENESLEEGKGFSSHELEGTLGSPIDGAQDARASFVYDGVSLGAPERDVYENWNKPERPSWEDLILDARLAAVQDSSISSLAPGEASNSAFFYDGIALGNAELQAYARWRQPAQPRWQNLVVNARLLELDPSAWIHDEHDPFEEVEEFNPPSRSTTPSEAKRTFG.KLDLNRPALRCEKTSEEVSQTGPLTRVQSEMRSAVQIKPSGLNAYRANTVASGHAFNGGGKVKRLGFKSHSAGNEALQGMNSGTKGLASDEGGQV---VPPDR....SSGPRGDNIGTYGSRRNERVRLATE.....TG......Q......FESEHIFGFKVV.HEV.....L.......RRTK....E..GRR...LERPMPAYLECKELHRQHVGTGRG....RS........GL.......VGRG...W.TDDSSYRSDQRATLSDPV.ASA.E..GA..TASNGYQLNQLGYAHQLAKDGLQNVSFDSVTMPIRVATTSYNYTVSRD.PVLSPT...SKEQEPPVLHLGPRGQTEAVLARETALTGQWPTRDREREVYREFLALYDFKTKLETNSLSVRQKRKALVSALDRTASLIGAAPVKALSQNAERQNTAELPDERREYDPRERGRR--sl.................
A0A815B560_9BILA/777-919 ........................................yidrnrnkfd------------------------------------------------------------------------.-.----.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.---------------------------------------------------------------RYREEIDRSGRDTMIGGKQKPKS-ASAEEGVSSIERDEKQ....TTSSKSD--GTYGTRSAEKTRLEQEenvkiTG......K.....tHESEHVIPFRVT.SGN.....LnfeskipRKSA....E..GRQ...MEDSGAAYFEQTSTHRQHPGTGSG....A-........--.......----...-.------------------.---.-..--..------------------------------------------------.------...--------------------------------------------------------------------------------------------------------------------rateyc.............
B9K400_AGRVS/165-819 ..................................................QEFRSDASKRRRTSSIDQKIGFPHAFEFDGMRLGSPEREVYENWSKLQAPSWKDLIIDARLEAIDSSGWLNE.-.SNNS.SVFEYEGLPLGEGERLAYEKWLGPAQPGWEDLVVDARIAELDRVASMSCSH---ERGKETPSNECERVPRVPIDDDEVSCASFVYDGV----AERAAHNRGSKPYQPTWEDLIIDARQAVIEGDAESNPVIGTTPSSVFSYEGMSLGDAERRAYGHWKQPAQPRWQNLVVNARLAELDPAAWIPDEHDPFEDGKVTGLLSEASTNSKSRLSLV.EQLEARPLCLTRDAAQEQTNVQNLACTQLEARRVLNFGPSGSDTDQTGSIAKSSPLDDVTKVKRLGSRSRRGARAAANDEIFHTKGSPSHGTGLTPQSTQPEK....AASTRSDNIGTYGSRKNERARLATE.....TG......K......YESEHIFGFKVV.HHT.....L.......RSTK....E..GRR...LERPMPAYLECKELHRQHVGTGRG....RT........GL.......VGRG...W.PDDASYRSDQRATLSDPV.AST.E..SV..TASNGYQLNQLGYAHQLANDGLQCETPDGVIMPLQVATTSYNYTVSRD.PVLSSP...CKDQTSELLHLGPRGQTEAVLARETALTGKWPTREREQKVYREFLALYDVKKDLETMPLGLRKKKALLVSALNRTAASIGAS---------KAENAFDEFYERRIYDPRDRARDNI...................
A9CL19_AGRFC/167-837 ..................................................EEFRSEASKRKRKKPIDQDENSPTSFYYDGMRLGEPEREAYDNWGNAEPPTWKDLVLKARLDAIDSSAWLFA.S.EGSS.STFEYEGIPLGEGERQAYKEWQEDAQPTWEDLVINARMAELDHPSWITDEHNSLEENLEFRPDARQASLKDSTDQRKSSSASFIYDGMKLGEPEHAAYENWSKPERPSWEALILDARQASIASSSVSNSLLAKTSSPVFLYEGMSLGDAERQSYGRWRQPAQPRWQNLVVNARLADLDPLAWIPDEHDPFAEAEALSPTSQSSGANKSNRALG.QSDSGRP-AFAYLAAQEASHLQSPACSQLETRRALNFGSPGPDANPTESIAKCNRLDGVSKIKRLGTKGRRAVNATIHGGKFGAQGLLSEDCGQAAEPSPSEQ....TTRPRTDNIGTYASRKNERARLATE.....TG......K......YESEHIFGFKVV.HDT.....L.......RATK....E..GRR...LERPMPAYLEYKELHRQHVGTGRG....RT........GL.......VGRG...W.PDDASYRADQRATLSDPV.ASA.E..GA..TASNGYQLNQLGYAHQLATHGLQSETPDGVTMPIQVATISYNYTVSRD.PVLSPP...SKEQAPPLLHLGPRGQTEAVLARETALTGKWPTLERECQVYQRFLALYDVKKDLDAKQLGVRQKKQALVAALNRTAGLIGASPLEAQSSTAEVEYTTDEPDERRVYDPRDRGRDKA...................
A0A1I3KKP3_9PSEU/1400-1585 .........................................rfhpyqkpa------------------------------------------------------------------------.-.----.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.-------------------------------------------------------------------------------------------------DSAAGK....PGKKRKYPESTYGDKDAERKRLENKysskiNGn....kT......HQSEHVAGYDIL.ADNggakgS.......RGDK....E..NKP...LENNAYAYFEDWANHRYHPGTGKG....PAahesgwskGG.......VEEGpntS.PGDLSYRERLGSYRHDQR.TAI.E..NN..DPSTAIQLNQLGYAHQQAFQ----------------------------.------...--------------------------------------------------------------------------------------------------------------------tpetldkythphsfservy
A0A172U3C0_9GAMM/20-241 .............................ggvdkkkkkmklllrkrrgky------------------------------------------------------------------------.-.----.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.-------------------------------------------------------------------------------------------------------....-------GVGTHGSAAFQRKTLGTT.....GT......R......HESEHVVGYNVYaEDH.....D.......RKHG....E..GKV...IEMQGLAYLEVKPLHRAHPGTGSG....AA........A-.......----...-.---DIYRNIQRGILQDGK.SDVnN..KK..TVSSAVQFNQLEYAHLPADAKGDA-----TGQDFFIADLSYEAMVRNG.NSVSF-...YDGNGHTSFQISQVERAEMLLAYEIRKTGKWPTQQRIAEVL---------------------------------------------------------------------------eycglkpivkqqtdkvt..
A9CL19_AGRFC/37-168 .......................................rpaddslegqt----------------DRGEHPSASFDYDGMKLGAAEREAYENWCPSNRPTWKDLVLRARLDAIDSSAWLPD.LgEESP.LIFRYEGIPLGEGERQAYKEWQEEAQPTWEDLVVNARMAVPDPCADVADEHNPLKEGEE----------------------------------------------------------------------------------------------------------------------------------------------------------.-------------------------------------------------------------------------------------------------------....-------------------------.....--......-......------------.---.....-.......----....-..---...------------------------....--........--.......----...-.------------------.---.-..--..------------------------------------------------.------...--------------------------------------------------------------------------------------------------------------------...................
#=GC seq_cons ...........................................t.tpttt..........................................................................................................................................................................................................................................................................................................................................................................................................................Gpaus+ttpptRLttt.....ts......p......apuEHhhsatsh.tps.............ttpt....p..u+....lEp.h.AY.E.hphHRtH.GTGpt....ts..............................tYRtt.tshh.........p..t...ssusuhQhNQLtYAap.................................................................................................................................................................................
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