#=GF ID   Arteri_env
#=GF AC   PF01606.20
#=GF DE   Arterivirus envelope protein
#=GF AU   Bashton M;0000-0002-6847-1525
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Pfam-B_664 (release 4.1)
#=GF GA   23.00 23.00;
#=GF TC   23.80 23.20;
#=GF NC   21.50 19.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 --cpu 4 -Z 75585367 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   7571421
#=GF RT   The envelope proteins of lactate dehydrogenase-elevating virus
#=GF RT   and their membrane topography. 
#=GF RA   Faaberg KS, Plagemann PG; 
#=GF RL   Virology 1995;212:512-525.
#=GF RN   [2]
#=GF RM   8847527
#=GF RT   Sequence comparison of open reading frames 2 to 5 of low and
#=GF RT   high virulence United States isolates of porcine reproductive
#=GF RT   and respiratory syndrome virus. 
#=GF RA   Meng XJ, Paul PS, Halbur PG, Morozov I; 
#=GF RL   J Gen Virol 1995;76:3181-3188.
#=GF DR   INTERPRO; IPR002556;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of viral envelope proteins from the
#=GF CC   arterivirus genus; this includes porcine reproductive and 
#=GF CC   respiratory virus (PRRSV) envelope protein GP3 and lactate 
#=GF CC   dehydrogenase elevating virus (LDV) structural glycoprotein.
#=GF CC   Arteriviruses consists of positive ssRNA and do not have a DNA
#=GF CC   stage.
#=GF SQ   9
#=GS Q773G8_PRRSB/1-212        AC Q773G8.1
#=GS A0A0B5JFR5_9NIDO/140-245  AC A0A0B5JFR5.1
#=GS GP3_PRRSL/1-211           AC Q04567.1
#=GS O55491_PRRSV/1-212        AC O55491.1
#=GS Q83020_LDV/1-191          AC Q83020.1
#=GS A0A2H4MWN8_9NIDO/124-202  AC A0A2H4MWN8.1
#=GS A0A6B9PEG3_9NIDO/176-255  AC A0A6B9PEG3.1
#=GS A0A167L764_9NIDO/1-199    AC A0A167L764.1
#=GS A0A6B9PEG3_9NIDO/4-180    AC A0A6B9PEG3.1
Q773G8_PRRSB/1-212                   .............MANSCTFLHIFLrCGFL-YSFCCAVVANSNA.....TFCFWFPLVR..GNF.SFEL.TVNYTVCPPCLTRQAAAEVYEPGRSLWCRI..G....HDRCGEDDHDELGFMVPPG---LSSEGHlTSVYAWLAFLSFSYTAQFHPEIFGIG.NVSQ...VYVDIKHQFICAVH.DGENATLPRH.DNISAVFQTYYQHQVDGGNWFHLEWLRPFFSSWLVLNVSWSLRRSPASHVSVRV...................
A0A0B5JFR5_9NIDO/140-245             yelpphqivlpmv------------.------------------.....----------..---.----.------------------------------..-....----------------------------.--------LQVATYVAILHPQLFGFE.NITA...VVAH--ENFICFEH.GGNPVNITKA.HPDSGFRSTLYDLEV---QWQYLEWVRPLFSCWLVMCISLTLRRSSA-------llaer..............
GP3_PRRSL/1-211                      .............MAHQCARFHFFL.CGFICYLVHSALASNSSS.....TLCFWFPLAH..GNT.SFEL.TINYTICMPCSTSQAARQRLEPGRNMWCKI..G....HDRCEERDHDELLMSIPSGYDNLKLEGY.---YAWLAFLSFSYAAQFHPELFGIG.NVSR...VFVDKRHQFICAEH.DGHNSTVSTG.HNISALYAAYYHHQIDGGNWFHLEWLRPLFSSWLVLNISWFLRRSPVSPVSRRI...................
O55491_PRRSV/1-212                   .............MVNSCTFLHIFLcCSFL-YSFCCAVVAGSNT.....TYCFWFPLVR..GNF.SFEL.TVNYTVCPPCLTRQAATEIYEPGRSLWCRI..G....YDRCEEDDHDELGFMVPPG---LSSEGHlTSVYAWLAFLSFSYTAQFHPEIFGIG.NVSR...VYVDIKHQLICAEH.DGQNTTLPRH.DNISAVFQTYYQHQVDGGNWFHLEWLRPFFSSWLVLNVSWFLRRSPANHVSVRV...................
Q83020_LDV/1-191                     ..........mag-------VNAIF.CLFICCSGICFVDCNVTAs...tQVCLWFPIHE.tGKT.HLEL.ALNFTLCKMCGVVENSYY-----SHPFC-V..T....DDTCEESSSQYLDFDFPDDVQLL-----.SSIYGTIAINALVFAIHQVPSMF--G.NVSA...VFFS--HNSLCY--.---NSTPVEHnQNVTTSLAIF---DGDVEKWYVLEYIRPLFSSWLVLNVSYFLRRSTAGRATRRL...................
A0A2H4MWN8_9NIDO/124-202             ...evkyeihpyg------------.------------------.....----------..---.----.------------------------------..-....----------------------------.--------------------------.----...------HALICAEAaAGRNTTEVNA.----THFVSYIDRLHISEAAFRKEWVRPFFSCWLVLWVSIFLRGTRASRVTVR-h..................
A0A6B9PEG3_9NIDO/176-255             .dtvaysfspyga------------.------------------.....----------..---.----.------------------------------..-....----------------------------.--------------------------.----...-------GFICAKH.---NSTSVVR.DVTSAVFHTHFERTALTSYQYRKEWVRPFFCSWLVLWVSLGLRRLRAGRATV--vi.................
A0A167L764_9NIDO/1-199               ........mvfcw------LLYACLsCILFQCVCCSNNITNSSSaevptPTCFSFP--R..ANF.SVHM.HFEALVCKMDGARTIGSGRTSASTGGCSSVanG....EGRWPDRSILQYPHNITADFDLNNTL--.DQSHAHIAAL-LTAVLTYDPEAFNLNpNYTRgfnVSTDEKHYTFCV--.---NGTILLE.NSTLGSYYFFNPH---TWDLYILELFRPFVLSLLLLSISF--------------a..................
A0A6B9PEG3_9NIDO/4-180               .........alsq----FCFLFSLC.CSFIVVGCAGASSTPTTV.....-VATTAAIMDdpGKLaCFSLpLMNHTYMNWSLVVNVSVS---VARHVYCRL..SgpphGSRCEPKQVDPQRDFLEDLGTAIPVDQRpNHVYNSLAIVAFILLASYQPQVFGFA.HIDT...IILVPNNRTLLKEC.GGN-------.------------------------------------------------------geknekgedkgcdsdtvay
#=GC seq_cons                        ....................h..hh.C.hh.h.hhs...sssss......hsh.hs..c..uph.phph.hhphhhh..s.s.p.u.......pt.hs.l..s.....sph..pp.......h.s..............as.lAh.shshshphpPphFshs.Nlot...Vhhs..HphICscp.sGpNsT.spt.pshouhatsahp+ph.stphahLEWlRPhFSSWLVLslShhLRRo.As.soh.....................
//