#=GF ID CBP66_2nd
#=GF AC PF20992.1
#=GF DE Nuclear cap binding complex subunit CBP66 second domain
#=GF AU Bateman A;0000-0002-6982-4660
#=GF SE Bateman A
#=GF GA 27.00 27.00;
#=GF TC 31.60 36.60;
#=GF NC 26.80 19.00;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch --cpu 4 -E 1000 -Z 75585367 HMM pfamseq
#=GF TP Domain
#=GF RN [1]
#=GF RM 3120186
#=GF RT Trypanosome mRNAs have unusual "cap 4" structures acquired by
#=GF RT addition of a spliced leader.
#=GF RA Perry KL, Watkins KP, Agabian N;
#=GF RL Proc Natl Acad Sci U S A. 1987;84:8190-8194.
#=GF RN [2]
#=GF RM 15743819
#=GF RT Novel and essential subunits in the 300-kilodalton nuclear cap
#=GF RT binding complex of Trypanosoma brucei.
#=GF RA Li H, Tschudi C;
#=GF RL Mol Cell Biol. 2005;25:2216-2226.
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC This entry represents the second domain of the CBP66 component
#=GF CC of the trypanasome nuclear cap binding complex. Trypanosomes
#=GF CC have a different cap 4 structure for mRNAs [1]. CBP66 is part of
#=GF CC the complex that recognises this cap.
#=GF SQ 16
#=GS A0A0S4J8F6_BODSA/120-196 AC A0A0S4J8F6.1
#=GS Q4DTX4_TRYCC/105-182 AC Q4DTX4.1
#=GS Q57XW7_TRYB2/105-182 AC Q57XW7.1
#=GS A0A061IXS3_TRYRA/105-182 AC A0A061IXS3.1
#=GS Q4Q9X1_LEIMA/105-182 AC Q4Q9X1.1
#=GS A0A422NUS2_9TRYP/105-182 AC A0A422NUS2.1
#=GS A4I1G5_LEIIN/105-182 AC A4I1G5.1
#=GS A0A0N0DV58_LEPPY/113-190 AC A0A0N0DV58.1
#=GS F9WHT0_TRYCI/106-183 AC F9WHT0.1
#=GS A0A0L1KTZ7_9EUGL/88-163 AC A0A0L1KTZ7.1
#=GS A0A1X0NNM1_9TRYP/106-183 AC A0A1X0NNM1.1
#=GS A0A422P1X4_TRYRA/105-182 AC A0A422P1X4.1
#=GS A4HE65_LEIBR/109-186 AC A4HE65.1
#=GS S9TU24_9TRYP/106-183 AC S9TU24.1
#=GS V5D8Y9_TRYCR/105-182 AC V5D8Y9.1
#=GS K2NPM4_TRYCR/105-182 AC K2NPM4.1
A0A0S4J8F6_BODSA/120-196 ....rrsg----ADEVYRDTIVIDGVEVSKETLTSTKGLLEAYRGMSVPKWCSHTIEKQDCPLGQLCRRIHKKEFQVTE-KRRRV-d.......
Q4DTX4_TRYCC/105-182 ........RPAPSEAVYTPTLTVEGEVVQKAELADTRGLELVYRGRAVAKWCPHTLAREDCLFGTACYRLHKRAYQKTVLKRPRL-g.......
Q57XW7_TRYB2/105-182 ........RPAPLQSVYTPTVTIEGETILKEELANTRGLELVYRGRAIARWCPNTLSQQDCPFGASCNWIHKCAYQQTVRKRPRLD........
A0A061IXS3_TRYRA/105-182 ........RPLPSEAVYTPTLTVEGDVVQKAELADTRGLELVYRGRAIAKWCPHTVVQEDCPFGTACYRIHRRAHQKTVLKRPRVE........
Q4Q9X1_LEIMA/105-182 ........KPCPPEPVYKPFLMVENEEVRKEELADTRGLELVYRGRAVAKWCARTLAGEDCFFGVSCLKLHKAAVQRTVRKRPRIE........
A0A422NUS2_9TRYP/105-182 ........RPLPSEAVYTPTLAVEGDVVEKAELADTRGLELVYRGRAVAKWCPHTVAQEDCPFGTACYRIHRRAYQKTVLKRARVE........
A4I1G5_LEIIN/105-182 ........KPCPPEPVYKPFLMVEGEEVRKEELADTRGLELVYRGRAVAKWCARTLAGEDCFFGVSCLRLHKAEVQRTVRKRPRIE........
A0A0N0DV58_LEPPY/113-190 ........KPRPPEPVYNPYLNVEGTEVRKVDLADTRGLELVYRGRALAKWCPRTLAGEDCHFGIACLKLHKSAVQRTVRKRPRID........
F9WHT0_TRYCI/106-183 ........RPAPLQSVYTPTVVIEGETVLKEELADTRGLELVYRGRAVARWCSSTLSQQDCPFGTSCSWVHKRAYQRTVRKRPRIE........
A0A0L1KTZ7_9EUGL/88-163 evsnrlsq-----------SLYIDGEWVKKSELAYSQGLQQGVSGVKYPKWCKFTESEIDCPQGELCNFIHLQRFQRTK-------npdkrknl
A0A1X0NNM1_9TRYP/106-183 ........RPAPCEAVYTPTITIEGTTVQKSDLVPTRGLELVYRGRAVARWCPHTQAHEDCLFGTSCHRIHLKAYQHTVRKRPRMD........
A0A422P1X4_TRYRA/105-182 ........RPLPSEAVYTPTLTVEGDVVQKAELADTRGLELVYRGRAVAKWCPHTVAQEDCPFGTACYRIHRCVYQKTVLKRPRVE........
A4HE65_LEIBR/109-186 ........KPCPPEPVYNPYLIVEGEEVRKEELADTRGLELVYRGRAVAKWCARTLAGEDCYFGVSCLKLHKNATQRTVRKRPRVE........
S9TU24_9TRYP/106-183 ........RPPPLEAVYQPHITVEGETVAKEALATTRGLELAYRGLAVPLWCPHTKDGEDCYYGMSCYKVHLKEHQRTVRKRPRTD........
V5D8Y9_TRYCR/105-182 ........RPAPSEAVYTPTLTVEGEVVQKAELADSRGLELVYRGRAVAKWCPHTLAGEDCPFGTACYRLHKRAYQKTVLKRPRL-g.......
K2NPM4_TRYCR/105-182 ........RPAPSEAVYTPTLTVEGEVVQKAELADTRGLELVYRGRAVAKWCPHTLAKEDCLFGTSCYRLHKRAYQKTVLKRPRLE........
#=GC seq_cons ........RPsPsEuVYsPTLsVEGEsVpKtELADTRGLELVYRGRAVAKWCP+TlApEDC.FGsuCh+lHKpAaQ+TVhKRPRl-........
//
